Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00893 ATGGTGTCGCTGTCGCCACTCGCAAACCCTTCATCTCTTCTATCTTCTACCACCTTTCTTCATCCATTGATGTTCCATTACCCTCCAAACCCTTCACCCTCCCACCCCAAACTCAAAGCCCAATTCTCCGTCACCCAACAACCACAACCGTCCACCACCAAGCACTCCATTCGCCGCCGCCGCACCGTCGCCATTGCCAACGCCGAGTTCGCGTCCTTCATTGCTCTCTTTCAACAATTCGGAATCGGCTCTGCGGAGACCCAATCGCTCTTCTTCAACAACCCCGACCTAACCACCGTCTCAATCGAATCACTGCGCGCTCGCATTCTCTCTCTGCGCTCTCTCGGCTTCGACCCTCTCACTCTCTGCAAATTACTCACAAAGCGCCCAACCCTCTTAACATCTCACCAAATCGACCCTTTGGTAACCTTTCTCAGAGACAATTTGCAAGGAAAACTCGACAAACACCAACTCAATCGCCTCTTCTCCGCTACGGACCCAAAACTGTTTGAGACTTTTCCCCACAAGGTTCAAACCCTCGTTGACCGGGGAATCCCCGTTGACCAAATTGTGCACGTGCTCAACAACGTGAGTCTGCCAAAGGCCTTGTGTCAAAGGTCGGTTGAGGATATCCACAGAATTGTATCTTTCTTAGAACCCTTTGGTGGCATTGCTTTGATTCTCAAGCGCCCTGCCGTTTTGAACCATGATTTGGATACTCAGCTTGTTCCAAGAGTCAAGCTTTTGATGGAGCTTAGTGATGGAGACAGGGATGGTGTTAAGAAAGTGCTGCTTAGGTTCCCTATCTTCTTGAATTATAGTGAGAAACATGTGGAGGAACATGTAGGGTTTCTGAGATCTTTTGTGGAGCTTGATGACAGACAGATATTTAGGATAATACTGGGGTTCCCGGCTATTGTTACTGCTAGCAGAGAGAGGAAACTGCGTCCTAGGATACGGTTTCTCAAGGAATGTGGGTTGGATTCGGGTGATATCTTCAACTTCTTGGTTAAAGCGCCAACTTTTCTAAGCAATTCGTTCCATGAGAACATTGCATATAAGCTGGTGTTGCTGGTCAAGATTGGGTATAGGCATAGGTCAAAGGAGTTGGCAATGGCGGTTAGGGCTGCTACTAGGACAAACTGTGAGAACATGCAGAAGGTTATTGGTTTGTACTTGAATTATGGGTTTACGTGTGAAGACATTGTTGCAATGAGCAAGAAGCAGCCGCAGATTCTGCAGTATAACCACGATTCTTTGCAGAAGAAGATGGAGTACCTGATAGAGGATATGGGCCGTGACATTGGGGAGTTGCTGCTTTTTCCTGCATTCCTTGGTTACAAGTTTGATGACAGGATTAAGCATAGGTATGAAGTGAAGAAGAGTGTTAGAGGGGCGGGAATGTCTATCAATAAGCTTTTAGCTGTTTCCGAGGAGAGATTCAGTGGCAAACGAAAAATGGCCCATGCCATAGATGAACTTGAGTAA 1488 0.4724 MVSLSPLANPSSLLSSTTFLHPLMFHYPPNPSPSHPKLKAQFSVTQQPQPSTTKHSIRRRRTVAIANAEFASFIALFQQFGIGSAETQSLFFNNPDLTTVSIESLRARILSLRSLGFDPLTLCKLLTKRPTLLTSHQIDPLVTFLRDNLQGKLDKHQLNRLFSATDPKLFETFPHKVQTLVDRGIPVDQIVHVLNNVSLPKALCQRSVEDIHRIVSFLEPFGGIALILKRPAVLNHDLDTQLVPRVKLLMELSDGDRDGVKKVLLRFPIFLNYSEKHVEEHVGFLRSFVELDDRQIFRIILGFPAIVTASRERKLRPRIRFLKECGLDSGDIFNFLVKAPTFLSNSFHENIAYKLVLLVKIGYRHRSKELAMAVRAATRTNCENMQKVIGLYLNYGFTCEDIVAMSKKQPQILQYNHDSLQKKMEYLIEDMGRDIGELLLFPAFLGYKFDDRIKHRYEVKKSVRGAGMSINKLLAVSEERFSGKRKMAHAIDELE 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00893 495 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF8, CHLOROPLASTIC 78 486 - -
Cca03g00893 495 PANTHER CGI-12 PROTEIN-RELATED 78 486 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 Pfam mTERF 315 481 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 Pfam mTERF 75 348 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 Gene3D Transcription termination factor 3, mitochondrial 276 489 IPR038538 -
Cca03g00893 495 Gene3D Transcription termination factor 3, mitochondrial 64 275 IPR038538 -
Cca03g00893 495 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 123 152 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 88 118 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 224 255 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 333 364 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 403 434 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 435 467 IPR003690 GO:0003690|GO:0006355
Cca03g00893 495 SMART mt_12 297 328 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Cca03g00893 mTERF 2.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00893 - - gmx:100799904 672.93