Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00891 ATGGAGCATGATATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACGGTATACAAATGCATGCTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAACTGAGGAATTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACTGGCATAAATGGTCCTCAAGACGAGAGTGTTGCACAGCAGAAGGTTGAAGCCACTGCTGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATAAGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACAAAGCCTGACTTGGAAGCTGAGAGTGGTCCTGTCGATGACATGCAGGAATTTTCTCCGCTGAAAGGTGGGGATGAAGCATATCCAAGTGGGACAGAGACTCAAGAAGTTGAAACATGCATTCGTTTAGGCCAGACATTGATGATGCATGACAGTCGTGATGGAGGATTAACTGTGGGTGTTAGCAAAAATGGTGAGGCAAGCACGACTAAGGACAAGGATGCTGATCCAGAGCATTTTGGGAATGCTAGCATCAGTGATGAGGCTCGTGACAATCACTATGTTCAAATTAACTCTTCCAAGGAAGCTATAGACTTGATTGGAACATTTCGTACTCATCCAAACTGTACCCTAAAGAATTCCACAGTTAATTGCACAGGCAAGTTTGACTTCTCTCCTCAATTGGATCTTTCTCTGAGAAGATCCCGTCCTAGCAGCTTTGAGAATGAACTCACTGAAGACAGGCACACCCTTATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCATTTGCAAGCCTCGACGCCTGCTGTGTTAATTAACTTCTGTGATCAACAAAGAGAACAGAGAACAAATTGTGAGAAAAATATCTCTCATGTCGCCACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAAATGTATCATGTCTCCAACTACAGTCCAATCAAAAGAATCTGAACTTGCAACCTCACAGTCCCAGCATGGGCATTCTCTTCCAATCCAAGTAAAGGGTGTAAGGTTCAATGATCTATGCACAGCCTATGGTTCTGTACTTCCTTCAGTGTTTCGTACACAGTCAGGTCCCCCGGCAATGCCGAGTCCAAGTTCAGTTGTGCTCCTTGAACCAAACTTTCATGTAAATGCATTTTATCAGTCAAATATGAAAGATAGTAGTTCAGAGCAGCTTTATGAGCCTTGTGGTCCAAATGGAAACAACACCCAAAACCACATAGTATACACACAGGAACACAAATCAGAACATGCAGAGGATCGAGGACATATCTCTCCTACAACTGATCAAAGTGTATCAAGTAGCTTCTGTAATGGAAATGCAAGCCATCTTAACAGCATCGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGAACAAGTTACCACTGTCATGGCAGCTTCAGAGGCCAAGAATGAAGACCTCACAAACAATGGAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGCTATGAGAGCAGAAAGAAACTAGCGGAACAGCGCCCCAGAGTGAAAGGACAATTTGTTCGTCAAGTGAATCCTGATCCTCTTGTTGCAGAAAAAGATGGCAAAGAATATGATCATTTACAGATTTCTGACTCACTGGAGAGGAGAACATGA 1758 0.4249 MEHDICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNKELIEKGSDAQSSCTKPDLEAESGPVDDMQEFSPLKGGDEAYPSGTETQEVETCIRLGQTLMMHDSRDGGLTVGVSKNGEASTTKDKDADPEHFGNASISDEARDNHYVQINSSKEAIDLIGTFRTHPNCTLKNSTVNCTGKFDFSPQLDLSLRRSRPSSFENELTEDRHTLMHSNASAFKRYTNRHLQASTPAVLINFCDQQREQRTNCEKNISHVATGCNSDSSTPSMQKCIMSPTTVQSKESELATSQSQHGHSLPIQVKGVRFNDLCTAYGSVLPSVFRTQSGPPAMPSPSSVVLLEPNFHVNAFYQSNMKDSSSEQLYEPCGPNGNNTQNHIVYTQEHKSEHAEDRGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVEQVTTVMAASEAKNEDLTNNGNSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVNPDPLVAEKDGKEYDHLQISDSLERRT 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00891 585 ProSiteProfiles Response regulatory domain profile. 1 52 IPR001789 GO:0000160
Cca03g00891 585 MobiDBLite consensus disorder prediction 178 195 - -
Cca03g00891 585 MobiDBLite consensus disorder prediction 542 585 - -
Cca03g00891 585 ProSiteProfiles CCT domain profile. 515 557 IPR010402 GO:0005515
Cca03g00891 585 SUPERFAMILY CheY-like 6 59 IPR011006 -
Cca03g00891 585 Gene3D - 1 120 - -
Cca03g00891 585 PANTHER POPULUS TRICHOCARPA PSEUDO-RESPONSE REGULATOR 5A MRNA 1 551 - -
Cca03g00891 585 MobiDBLite consensus disorder prediction 563 585 - -
Cca03g00891 585 MobiDBLite consensus disorder prediction 174 195 - -
Cca03g00891 585 Coils Coil 486 506 - -
Cca03g00891 585 MobiDBLite consensus disorder prediction 103 125 - -
Cca03g00891 585 Pfam CCT motif 515 557 IPR010402 GO:0005515
Cca03g00891 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 551 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00891 Cca-Chr3 22205083 22208820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00891 1 375 Response Regulator Gene Family AT5G24470 33.420 2.95e-44 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Cca03g00891 CCT 9.1e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00891 K12130 - gmx:100777119 1012.29