Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00884 ATGGGTTCAACCGGCGAGACCCAGATAACCCCAAGCCACGTGTCGGACGAAGAGGCGAACCTGTTCGCGATGCAGCTGGCGAGCGCGTCGGTCCTCCCAATGGTCCTGAAGTCGGCCCTGGAGCTGGAGCTGCTGGAAATCATGGCGAAGGCCGGCCCCGGCGTCCACCTCTCTCCGGCGGACATCGCCGCCCAGCTCCCGACGCGCAACCCCGACGCCCCCGTCATGCTCGACCGCATCCTCCGCCTCTTGGCTTGCTACAACATCCTCACTTTCTCCCTCCGCACCCTCCCCGACGGCAAGGTCCAGAGGCTCTATGGCCTTGCTCCCGTTGCCAAGTACTTGGTCAAGAACCAAGATGGTGTCTCCATTGCTTCTCTCAACCTCATGAACCAGGACAAAGTCCTCATGGAAAGCTGGTACTACTTGAAAGATGCAGTTCTTGAAGGGGGAATTCCATTTAACAAGGCCTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAGGGTTTTCAACAAGGGCATGTCTGATCACTCTACCATCACAATGAAGAAAATCCTTGAGACCTACACAGGCTTTGAGGGTCTTAAATCTCTGGTTGATGTTGGTGGTGGCACTGGAGCTGTAGTCAACATGATTGTCTCAAAATATCCCACTATTAAGGGCATTAATTTTGATTTGCCCCATGTCATCGAAGATGCCCCATCCTATCAAGGAGTGGAGCATGTCGGTGGAGACATGTTTGTCAGTGTTCCAAAAGCTGACGCTATTTTTATGAAGTGGATTTGCCACGATTGGAGTGATGAACACTGCTTGAAGTTTTTGAAGAACTGCTACGAGGCACTTCCAGATAACGGGAAGGTGATTGTGGCGGAATGCATTCTTCCAGTGGCTCCAGACTCTAGCTTGGCCACAAAAGGTGTGGTTCACATCGATGTGATCATGTTGGCTCATAATCCAGGTGGGAAAGAAAGAACAGAGAAAGAGTTTGAGGCTCTGGCCAAAGGGGCAGGATTCCAAGGTTTCCGAGTCCTGTGTTGTGCTTTCAATACCTACGTCATGGAATTTCTCAAAAAGGTTTAA 1098 0.5109 MGSTGETQITPSHVSDEEANLFAMQLASASVLPMVLKSALELELLEIMAKAGPGVHLSPADIAAQLPTRNPDAPVMLDRILRLLACYNILTFSLRTLPDGKVQRLYGLAPVAKYLVKNQDGVSIASLNLMNQDKVLMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNRVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVVNMIVSKYPTIKGINFDLPHVIEDAPSYQGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEKEFEALAKGAGFQGFRVLCCAFNTYVMEFLKKV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00884 365 PANTHER BNAA10G07270D PROTEIN 1 364 - -
Cca03g00884 365 CDD AdoMet_MTases 204 295 - -
Cca03g00884 365 PIRSF O-mtase 1 363 IPR016461 GO:0008168
Cca03g00884 365 Pfam O-methyltransferase domain 140 345 IPR001077 GO:0008171
Cca03g00884 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 121 361 IPR029063 -
Cca03g00884 365 Pfam Dimerisation domain 34 85 IPR012967 GO:0046983
Cca03g00884 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Cca03g00884 365 SUPERFAMILY "Winged helix" DNA-binding domain 15 118 IPR036390 -
Cca03g00884 365 Gene3D - 1 115 IPR036388 -
Cca03g00884 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 24 363 IPR016461 GO:0008168
Cca03g00884 365 PANTHER O-METHYLTRANSFERASE 1 364 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00884 Cca-Chr3 22043655 22047186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00884 1 365 Monolignol Biosynthesis Gene Families AT5G54160 76.986 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00884 K13066 - gmx:100780100 711.835