Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00882 ATGGACTGTTGTCAAGGGGATGGTGTGGCGGTAGTGTCTCTGAATTCGCTTCCGCTAGGGTTCCGATTCCGACCCACGGACGAGGAACTCATCGATTTCTACCTTCGAAAGAAGATCAATGGTAACAGTGGCGAGGTTTGGGTTATCCGAGAAATTGATGTCTGCAAGTGTGAGCCTTGGGACATGCCCGATTTGTCGGTGATACGGAACAAGGATCCGGAGTGGTTCTTCTTCTGTCCACGGGACCGTAAGTATCCAAATGGGCAGCGATTGAACCGTGCGACGAATCATGGGTATTGGAAGGCAACGGGGAAGGATCGTAACATAAAGTCTGGAACCAATTTGATTGGAATGAAGAAGACTTTAGTTTTCTACACTGGTCGTGCACCCAAAGGGAAGAGGACCAATTGGGTCATGCACGAGTATCGCCCCACTTTGAAGGAGCTTGATGGTACCAATCCCGGACAGAGTGCTTTTGTTCTTTGTCGCTTGTTTAAGAAGCAAGATGAGAACCTTGAAGTTTCGCCCTGTGAGGAAGCAGAGGAGTTGCAATCTGATCTGGCTGTTGCTGCAGTGTCCCCCTCGCAGGTTACAGAAGATGATAAGGATCAGCTTACTATCCCTGCCAACTCTGGGGAAGCAATATCCAGCATTGCAACCCCACATGATGCTTGTGATGCACAAACGCAAATTGTGGCACCGGCTGCAGAGGTTAGATGGTTATTGTTTATTGGTACTATTTATCACTGGTTTGCAATGGTAATACGATATTTAACATATATAGTTATTTTTGGTCATTCCTATTTAGACGTTAGGATATTTAGAGGATCATTATTAAAAGTAATTTCAATCTTTATTGGCCAGAGTGAGCTCAATGTCAATTTGCTAAAAATCAATGTGTCTGTCTTGTAA 912 0.4507 MDCCQGDGVAVVSLNSLPLGFRFRPTDEELIDFYLRKKINGNSGEVWVIREIDVCKCEPWDMPDLSVIRNKDPEWFFFCPRDRKYPNGQRLNRATNHGYWKATGKDRNIKSGTNLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQSAFVLCRLFKKQDENLEVSPCEEAEELQSDLAVAAVSPSQVTEDDKDQLTIPANSGEAISSIATPHDACDAQTQIVAPAAEVRWLLFIGTIYHWFAMVIRYLTYIVIFGHSYLDVRIFRGSLLKVISIFIGQSELNVNLLKINVSVL 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00882 303 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Cca03g00882 303 SUPERFAMILY NAC domain 10 167 IPR036093 GO:0003677|GO:0006355
Cca03g00882 303 Pfam No apical meristem (NAM) protein 18 143 IPR003441 GO:0003677|GO:0006355
Cca03g00882 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 214 - -
Cca03g00882 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 91 12 214 - -
Cca03g00882 303 Gene3D NAC domain 26 172 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00882 Cca-Chr3 21975950 21978887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00882 9 180 NAC Transcription Factor Family AT4G35580 72.093 6.27e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g00882 NAM 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00882 - - gmx:100777071 380.948