Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00860 ATGAGAAGTTTACTCTCTGAGAGAAGCCTTAGGGCTAAGAATTGTTCACAAGATTGTGAAAGGACAGTTTTGATTGTACCTGATACCTTACCATCAGATGGTCCAGTGGATAAGCCTTCAACTTCAAGGTCCCTTTCTCTCAACAAGATTTTGTTCTCTTCATCAATGAAAGCAGCACATTCATTGCCAGTTACTCCAACTGCAAATTCAGGTGCAGAGAATGTGCATGGAAGACATCTAGGGTGTGATTCTGATTCGAGTAAAATGGAAGTAAATCAACACATCACTCGATCATTTTCCGTTCCAGTTAATGTCAAAGCTGCTAATTTAAGGCCTACAGATTCTAGGAGCCTGATTCGTGTAATTTCAGCAAGAACACTTCCAGGAACTATTGGTGGCATTCCAACTCAGAATGCTTCTGGATCAGAGATTGTCGATGAAGATGCTTCTGAAGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTTGAGCTTGGGGAAGGAGGGAATACTCTTAGGATGGAGTGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAAGACTGTGCAGTAAAGTGGTTTAGTATAAAAGGAAACAAGATATGTGATGTCTGCAAGCAGGAAGTCCAAAACCTTCCGGTAACACTATTGAAAATTTCTAATACTCAAACTGTTGCTCGACAGCCATTGAATGCACCGGCACCGCAGCAAAGAGAAGTAACATATTACAGGATATGGCAGGATGTATCAGTACTTGTCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAACTACTGGTTGCAGATTTGGGCACTCGTGCACTTGCCATTTCATTACCTTTCTCCTGTGTTTTAGGCCTCCTTTCATCTATGATTGCTTCAACCATGGTGAGCGGAAGTTACATGTGGGCTTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACTATGCTTAATGTTAATGCCATCCTCTCAGTTATTCTCTCTTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATTCTCTGCTAACGGAATATGTTAGATGGAGAACAAGAAGACTGATTCAATCAACACAGCAGCAGCAAGAACATCAAAGACAGCGTCATCAACTGCATAGGCTGCAGCAAGAGCAGAACCAATGA 1176 0.4167 MRSLLSERSLRAKNCSQDCERTVLIVPDTLPSDGPVDKPSTSRSLSLNKILFSSSMKAAHSLPVTPTANSGAENVHGRHLGCDSDSSKMEVNQHITRSFSVPVNVKAANLRPTDSRSLIRVISARTLPGTIGGIPTQNASGSEIVDEDASEDIPEEDAVCRICLVELGEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKICDVCKQEVQNLPVTLLKISNTQTVARQPLNAPAPQQREVTYYRIWQDVSVLVLVSMLAYFCFLEELLVADLGTRALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTMLNVNAILSVILSSFTGFGISISLNSLLTEYVRWRTRRLIQSTQQQQEHQRQRHQLHRLQQEQNQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00860 391 PANTHER OS02G0165000 PROTEIN 1 387 - -
Cca03g00860 391 SMART ringv_2 159 208 IPR011016 GO:0008270
Cca03g00860 391 Pfam RING-variant domain 160 207 IPR011016 GO:0008270
Cca03g00860 391 Coils Coil 368 391 - -
Cca03g00860 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 216 IPR013083 -
Cca03g00860 391 ProSiteProfiles Zinc finger RING-CH-type profile. 152 214 IPR011016 GO:0008270
Cca03g00860 391 PANTHER OS02G0165000 PROTEIN 1 387 - -
Cca03g00860 391 SUPERFAMILY RING/U-box 156 211 - -
Cca03g00860 391 CDD RING_CH-C4HC3_MARCH 160 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00860 Cca-Chr3 20987740 21000735 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00860 143 266 C3H Transcription Factor Family AT2G37950 33.333 3.48e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00860 - - gmx:100779396 642.114