Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00837 ATGTCAAGCTGCAGCATCGATGTTGCTCCTGAGAAACTCTGCTACATCCCCTGCAGCTTTTGCCACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAACCTGTGTGACATTGTGACCGTTCGATGCGGTCACTGCACCAACCTATGGTCTGTGAACATGGCCGCAGCGTTTCAGTCACTGTCATGGCAAGAAGTTCAGGAATCTGGTCACTCCAATTCACAATGTAGAATTGACACAGGATCCACTTCTAAATTCTGCAACAAGATACAAATGCATGCACCCACCGTTCATGTAAAGGAAGAAAGAGTTGTGAACCGAACTCCTGAGAAGAGACAGCGTGCACCTTCTGCTTATAATCAGTTCATCAAAGAAGAGATTCAACGGATTAAGGCCAATAATCCTGATATCAGTCACAGGGAAGCTTTCAGTACAGCTGCTAAGAATTGGGCACATTTCCCTCATATTCATTTTGGGCTGATGTTAGAAAGCAACAATCAAGATAATTAA 507 0.4438 MSSCSIDVAPEKLCYIPCSFCHIVLAVSVPCSNLCDIVTVRCGHCTNLWSVNMAAAFQSLSWQEVQESGHSNSQCRIDTGSTSKFCNKIQMHAPTVHVKEERVVNRTPEKRQRAPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQDN 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00837 168 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
Cca03g00837 168 SUPERFAMILY HMG-box 101 152 IPR036910 -
Cca03g00837 168 Pfam YABBY protein 9 159 IPR006780 GO:0007275
Cca03g00837 168 Gene3D High mobility group box domain 97 154 IPR036910 -
Cca03g00837 168 PANTHER AXIAL REGULATOR YABBY 5 1 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00837 Cca-Chr3 19508407 19513943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00837 8 166 C2C2-YABBY Transcription Factor Family AT2G26580 71.069 2.01e-79 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Cca03g00837 YABBY 1.4e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00837 K25796 - gmx:100804731 305.064