Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00818 ATGCTCTACGACATGAGCGTAGGAGCATTGTGGGACTTTCTGGGGTTGATTCGCAACATAAACCCTAGCGTGGTTGTGATGGAGGAGCAAGAGGCAGAGCACAACGAGGCAAGGTTTGAAGCTAGGTTTTGTAATTCGTTGAAATACTACTCGACGGTGTTTGACTGCATCGAGGAGAGTGGGGTTCCACAGGAGAGTTCGGTGAGGGCGAAGGTAGAGGAGATGTACGGGAAGAAGATATAG 243 0.4979 MLYDMSVGALWDFLGLIRNINPSVVVMEEQEAEHNEARFEARFCNSLKYYSTVFDCIEESGVPQESSVRAKVEEMYGKKI 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00818 80 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 80 IPR005202 -
Cca03g00818 80 ProSiteProfiles GRAS family profile. 1 80 IPR005202 -
Cca03g00818 80 PANTHER SCARECROW-LIKE PROTEIN 28 1 80 IPR030027 -
Cca03g00818 80 Pfam GRAS domain family 12 79 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00818 Cca-Chr3 18749047 18749289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00818 2 80 GRAS Transcription Factor Family AT1G63100 53.750 6.22e-22 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Cca03g00818 GRAS 2.2e-20 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00818 - - gmx:100786173 118.627