Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00807 ATGTTGATAACGGTCAGGGAAGCAGCTTCCAGTTTGTGGCTTAATCGTCTCAACGCAAAACCCTCTTTTAAAACACTCAAAACATCCATTTGCCAAGCCAGTTTCTCTGTCAAGGCAAGAACCACTCAATCATGGAATTCTGGACATCTTTCTACTAGCAGTGAGGTGGTAAATTTTGATCCCTTAGGTATTAACTCAGATTTATCTTCTCATTTGAATTCAACCTGGGAAAATCTGGTGTGCTTGTTCACACAAACATTTGAGAGTGCTTCAAGTACAGAAAAGGGAAAACCTAACTCTTCGCAAGGGGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAAGGTCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCACGGCTCGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGATCAGAATAGTTTATTAAGCACTTTGGACTCGTTTTCTGGTGGTGGTATTGGTAGACTTGGGGTATGCTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATCGTTTTCCAGCTTCTTGCACAAATATATCCCAAATTGCAAGATCTTCAAAAGAGAGAGGGTGAAGCTGGAAGAAAGAAAATTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGCAATTGGCCAAGTTCTTTACCTACGTCCCTATGTCAACGACTTTTCTGTAGAGTGGGTTCTTTCTTCTGTTATATTATTGACACTTGGCTCTGTGTTTACAACGTACATCGGTGAACGAATTACAGATCTAAAACTTGGGAATGGCACCTCTCTGTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCATTTGGTAGGACATTTGCGCAAGCTCTTAAAGATGCTAACTACATTGGACTCGCTACCATCATTGTGTCCTTCTTTCTGTTGGTAGTTGGTATTGTCTATGTTCAGGAAGCAGAGAGAAAAATTCCCCTTAACTATGCGTCGAGATTCACCAGCAGAAGCACTGGGCTTGAAAAGTCTGCTTACCTTCCCTTTAAGGTAAATAGTTCTGGAGTAATGCCTATCATATTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAGCTGCTCTAAAGAAGGCCGCAGTGGCGTTAAATCCAGGAGGTTCCTTCTACCTTCCATTTAACATACTTTTGATAGCCTTCTTCAACTACTATTACACTTTCCTACAACTGGACCCTGATGATGTGAGTGAACAATTGAAACGTCAAGGTGCTTCAATTCCACTTGTCAGACCAGGCAGAAGTACAGCTACATTTATCAAAACAGTTCTTAGTCGAATATCAGTTCTGGGTTCAACATTTTTGGCTATCTTGGCTGGTGGTCCAGCTGTTGTTGAGCAGATTACTCATTTGACTGCATTCAGGGGATTTGCAGGAACATCTATTCTTATTCTTGTTGGTTGCGCAACAGACACAGCAAGAAAAGTTCAAGCTGAGATTATATCCCAAAAGTACAAGAACATAGAGTTCTATGACTTTGATAAATATTGA 1605 0.4106 MLITVREAASSLWLNRLNAKPSFKTLKTSICQASFSVKARTTQSWNSGHLSTSSEVVNFDPLGINSDLSSHLNSTWENLVCLFTQTFESASSTEKGKPNSSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDQNSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKILQYTRYASVGFAIVQAIGQVLYLRPYVNDFSVEWVLSSVILLTLGSVFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTFAQALKDANYIGLATIIVSFFLLVVGIVYVQEAERKIPLNYASRFTSRSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLAALKKAAVALNPGGSFYLPFNILLIAFFNYYYTFLQLDPDDVSEQLKRQGASIPLVRPGRSTATFIKTVLSRISVLGSTFLAILAGGPAVVEQITHLTAFRGFAGTSILILVGCATDTARKVQAEIISQKYKNIEFYDFDKY 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00807 534 Pfam SecY 179 510 IPR002208 GO:0015031|GO:0016020
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 127 145 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 177 197 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 219 242 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 251 276 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 277 300 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 368 387 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 407 429 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 462 480 - -
Cca03g00807 534 PRINTS Preprotein translocase SecY subunit signature 496 514 - -
Cca03g00807 534 ProSitePatterns Protein secY signature 1. 178 197 IPR030659 -
Cca03g00807 534 Gene3D SecY subunit domain 118 523 IPR023201 -
Cca03g00807 534 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 45 532 IPR002208 GO:0015031|GO:0016020
Cca03g00807 534 SUPERFAMILY Preprotein translocase SecY subunit 119 517 IPR023201 -
Cca03g00807 534 Hamap Protein translocase subunit SecY [secY]. 115 527 IPR026593 -
Cca03g00807 534 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 45 532 - -
Cca03g00807 534 ProSitePatterns Protein secY signature 2. 270 287 IPR030659 -
Cca03g00807 534 TIGRFAM 3a0501s007: preprotein translocase, SecY subunit 126 523 IPR002208 GO:0015031|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00807 16 534 Chloroplast and Mitochondria Gene Families AT2G18710 80.871 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00807 K10956 - gmx:100810430 924.08