Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00806 ATGGGAGGTTTTAAGGACCCTGGGCTTGATGGACTACAAGTAATTTTCTATCAATCTCAATGGAAAACTGTAGGCCTTGCTATGTGTGAATTCATTCATGAGATTGAAACGGAACCAGTTAAGTGGAATGGGCCCACCACCAGGTTGGAGTATGAATATGATATTAGTGGCAACGACGACGTTTATCGTTGGGTTTTAAAGGATCCATCCAATTCCAGCTTCCTCTTTCCCATGGAATTGAAAAAGGGAAAGCTTGTAAGGTTCTACTCGGATGGCAAAAAGCGTAAAGAATCACTGTGGGGAGCAACTGAGCCTAGCAATTTGGTACCATCAGGGAAAAAGAGAATTGCTGAAACATTtagaattggagggtccaaggtattcccggaggaccacgagccgtggcgtaagagaatacttgacccgggtagcgagattgtgttgaaatggaaccgggtcttcatagtttcatgcttggtggctctttttgttgatccattgtacttttatttgcctagtgtggttgaaaatacagggtcttcatgtgtgaggacggacctaacattgcggattgttgtgacctttcttcgcactattgccgacgttttttatctgttgcacctcataattaagttcaggacggcatatgtggcaccaagctcgcgggtatttggcaggggtgaacttgtcatggacccaaagaagattgcaaggagatatgtcagatctgatttcttcattgattttattgccacactccctctacctcagatggtcatctggtttattataccagcaacaagaagccctcaaaccgatcacaagaataatgcacttgcattgattgttttgctccaatatattcctagattatatttgatttttccattaagttctcaaataatcaaagcaacaggtgtggttacgaagactgcttgggcaggagctgcatataatttgctgttgtacatgttagctagccatgttttaggggcagcttggtatcttctttctgtggaccgatacactacttgttggaaatccttttgcaaaaaggaaagtaatcctgaaaattgcttcatttacctagactgcagttctttgaatattgagccgcgcaagatatgggcaaatggtacaagtgtgtttaacagctgtgatcccagtaatgatgatatcaatttcaagtatggaatatttgaaaatgcaGTAAAGAAACATGTTGTGTCTTCAAACTTCATTCCAAAATACCTTTATTGTTTATGGTGGGGATTGCAGCAATTAAGTTCTTATGGACAGAACCTAGAAACTAGCACTTTTATAGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCTTGTATTATTTTCCCATTTGATCGGGAACATGCAGACATATTTGCAATCAATTACTATAAGGCTTGAGGAGTGGAGGCTTAAGCGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTCCCTGAAGATTTGAAAAGTCGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGTGGAGTTGATGAGGAAACTATTCTACGTGCATTGCCTGCTGATCTTCGCCGAGATATCCAACGCCATCTGTGCCTAGACCTTGTTAGACGAGTACCCTTTTTCTCACAAATGGATGATCAGCTTTTGGATGCAATATGTGAGCGAGGTAGACTGGATAGTTGTACTACAAATGGTGGCCGGACTGGTTTCTTCAACTCGATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAACTACTTTCTTGGGCTTTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACTAGGACAGTTAAAGCCCTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTCAAATTTGTAGCTAATCAATTTAGGCGCCTCCACAGTAAGAAGCTGCAGCACACCTTTCGATTTTATTCCCACCATTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGTTATAAGAAAAGGATGTCTGTGAAAGACCTCTGTTTGAGGGAATCCGTTCCTTTAGATGAAACAGTGGCTAGTGAGAGAGAACATGAGGACTATTCTGCTGCTTCAAATTCATCCCAAGTCAAATTGAACCTTGGGGCTACAATTCTTGCTTCTAGATTTGCTGCTAACACACGAAGAGGAGCTCTGAAGATTAAAGATGACTTGCCCCAGTTACAGAAGCCTGAAGAACCTGACTTCTCAACCGAAGCCGATGATGATTAG 2271 0.2673 MGGFKDPGLDGLQVIFYQSQWKTVGLAMCEFIHEIETEPVKWNGPTTRLEYEYDISGNDDVYRWVLKDPSNSSFLFPMELKKGKLVRFYSDGKKRKESLWGATEPSNLVPSGKKRIAETFRIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVVENTGSSCVRTDLTLRIVVTFLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYVRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYIPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKESNPENCFIYLDCSSLNIEPRKIWANGTSVFNSCDPSNDDINFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLKSRVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERGRLDSCTTNGGRTGFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSVKDLCLRESVPLDETVASEREHEDYSAASNSSQVKLNLGATILASRFAANTRRGALKIKDDLPQLQKPEEPDFSTEADDD 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00806 756 CDD CAP_ED 522 652 IPR000595 -
Cca03g00806 756 Pfam Ion transport protein 150 474 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca03g00806 756 SUPERFAMILY Voltage-gated potassium channels 144 470 - -
Cca03g00806 756 Gene3D Helix hairpin bin 476 539 - -
Cca03g00806 756 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 563 753 - -
Cca03g00806 756 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 102 563 - -
Cca03g00806 756 MobiDBLite consensus disorder prediction 735 756 - -
Cca03g00806 756 Gene3D - 153 473 - -
Cca03g00806 756 SUPERFAMILY cAMP-binding domain-like 478 643 IPR018490 -
Cca03g00806 756 Gene3D Jelly Rolls 562 639 IPR014710 -
Cca03g00806 756 PRINTS EAG/ELK/ERG potassium channel family signature 325 335 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g00806 756 PRINTS EAG/ELK/ERG potassium channel family signature 461 470 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g00806 756 PRINTS EAG/ELK/ERG potassium channel family signature 208 217 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g00806 756 PRINTS EAG/ELK/ERG potassium channel family signature 443 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g00806 756 PRINTS EAG/ELK/ERG potassium channel family signature 511 518 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cca03g00806 756 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 563 753 - -
Cca03g00806 756 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 102 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00806 Cca-Chr3 18117354 18132304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00806 78 755 Ion Channels AT4G30360 66.346 0.0 959
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00806 K05391 - gmx:100808425 1284.63