Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00792 ATGAGAAAAAAGACTGTAGGCAAACGTAAACCGTCGTCATTCCCACCTGTGACTGTTCCTTCCTTCTCCGCCATTCCGCTCCTTTGGGCATCTcccgaacctggacccgaacctggaaccgaacccgTGGATTTGTTGGACAAGAGCATATGCATATGTTGCGATAATAAAGGAGAAGGCGAGGAGGGAGTTCTGGTTTGCCACGAAAGTGGCTGCCCCATCAGCGTCCACGCCAACTGCATCGGTTCCGAACCTAAATTCGACGGTTCGGGTAACTTCTACTGCCCCTACTGCTGGTACAAGCGCGCCGTCGACACGTGTCAACAGCTCAGGGAGAAGGCCCTCGCCGCGAAGAAAGCCTTGTCACGCTTCTTAGACACCGACGCACGTGCGGATTCCGCTGGCGCACGTGCGGGCGCGGCGCAGGATGCGGAATCGGAATCGGAATCCGAAGAGAATAAAGACGGAGATGAGAGCAAGGTGTCTCTGAATGCGTCGCGTTGTTCTGTGAGTGAGACCAATGATTCGGAATCCAATGTGGAATCAGTGACAGTGAGGAAAAGGAAGGATGCTTCTGCGAAGAACTCGTTGTTTCAACAAgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatgagcatTGTAACGCTGAAGGGAAAATTGCTCGTGACGTAAACGAGGAGGAGGTTACGAGCTTCCGAAGTTTGAGGAAACTTCAGAGGTCACCGGGGAAAATGATGAAGCGGTTTTCACTGACCGGAAAACGTAAGAGATTATTTTGGACAAATGAAGAAGAGAGAGTTCTCAAGGCAGGAGTATTAAAGTTCTCAACAGAAAATCAGAAGATCCCTTGGAAGAAAATTTTGGAATTTGGTTGTGGTGTATTTGACAAGACTCGTACTCCTATTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAGAAAGGTTGA 966 0.442 MRKKTVGKRKPSSFPPVTVPSFSAIPLLWASPEPGPEPGTEPVDLLDKSICICCDNKGEGEEGVLVCHESGCPISVHANCIGSEPKFDGSGNFYCPYCWYKRAVDTCQQLREKALAAKKALSRFLDTDARADSAGARAGAAQDAESESESEENKDGDESKVSLNASRCSVSETNDSESNVESVTVRKRKDASAKNSLFQQEHEHEHEHEHEHEHEHEHCNAEGKIARDVNEEEVTSFRSLRKLQRSPGKMMKRFSLTGKRKRLFWTNEEERVLKAGVLKFSTENQKIPWKKILEFGCGVFDKTRTPIDLKDKWKNIISKKG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00792 321 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00792 321 MobiDBLite consensus disorder prediction 133 231 - -
Cca03g00792 321 SUPERFAMILY FYVE/PHD zinc finger 44 102 IPR011011 -
Cca03g00792 321 ProSiteProfiles Myb-like domain profile. 257 317 IPR001005 -
Cca03g00792 321 MobiDBLite consensus disorder prediction 181 231 - -
Cca03g00792 321 CDD SANT_TRF 265 317 - -
Cca03g00792 321 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 43 235 - -
Cca03g00792 321 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 226 320 - -
Cca03g00792 321 Gene3D - 255 318 - -
Cca03g00792 321 MobiDBLite consensus disorder prediction 162 180 - -
Cca03g00792 321 CDD PHD_SF 50 98 - -
Cca03g00792 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 134 IPR013083 -
Cca03g00792 321 SUPERFAMILY Homeodomain-like 260 317 IPR009057 -
Cca03g00792 321 SMART sant 261 319 IPR001005 -
Cca03g00792 321 ProSitePatterns Zinc finger PHD-type signature. 51 98 IPR019786 -
Cca03g00792 321 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 43 235 - -
Cca03g00792 321 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 226 320 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00792 262 316 Single Myb Histone (SMH) Gene Family AT3G49850 48.214 1.51e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00792 - - vun:114169284 316.62