Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00785 ATGACATTCGTTGACgagctggacctgtcggacgcggacctggagttggacctggCGCCATCGGTTCCAGTGAAGAAGGTCCCAAACGGCGACGTTTTCGAGGCGTCCCGCGCCGGCGACGTGGAGCGCCTCCGCTACCTGCTGGAGGCCGGCGTCAACGTCAACGCGCGGGACCAGTGGGACTCCGTCGCTCTCTACTACGCCTGCCTCGTCGGCCACCTCGACGCCGCCCGCATGCTCCTCGAGAACGGCGCCATCTGCTCCGAACACACCTTCGACGGCGACCGCTGCCACTACGCCGCCCTCAATTTGAAGGTCCGCAAACTCCTCAAGGCCTTCGAGGCCCGCCCTCCGCCCCTCGACCCCCTGCAGTCCTCTTTGCGCGACACCTTCCTCGCCGGTATTTCATCCACCCAGGGGTCCATTTGCAGTCACTTCCCTCCAGATGTAGTTTTTATTGTACAAGGAAGACCTATTCAAGCTCACAGAGTCATATTAAGTGCAAGGTCACCATTTTTCAAGAAAAAGTTTGCAACTGATTGGAAGGAGCGCAGTGAAGTAAGATTCTCAAGGGAAAGGTTGTCATATCCTGCACTTTATAGCCTTATACACTTCTTTTATTCAGACAGATTAGAGATTGCTGTTGATGACATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAAATGTGAATCACTGCAGAAATTTCTCGAGAAAGAAGTGATTCATCAAACATATGCAGATTATAAAGCACTGAGAGATGTAGATAATTCCCAGAAACGGTATATTTTACAAGGTCTATCCCTTCCTGAAGAAGACAGGCTTCCTGCAGCCTTGCATCGAATCCTTCTGATTGCCCTTGCGAATTCAACCCATGAAAGTGGTCAAGAAGATGAAATTGATAAATTGATATCTAGGATGAGTGCCATGCAGATGGCTAAATCTCTGGATGATCTTGCTGATGTTTGTGTAAAAGTAGATAGAAAAATTTTTCGCTGTCACCAAGTTATTCTAGCATCTAGGTCAGAATATTTCAAAGCAAGATTATCACATATGAAGGACTTTCATGAAGGGAAAGATGAGTTATCTGTTGACATCCTTCCTTGTCTTGAAGAACATGACTTGAGCATGGAAGCTTTTGAGAAAATGATTGAGTATATGTACACTGATCGTTTGCAGGACATAAATCCAGATCAGGCTGAGGAAATGTTGGATGTTGCTTCTAGATATTTATTGTTTCCTCTCAAGCGGGCAGTGGCTGATGTCTTGTTGCCACACTTGGAATTGGTGTCACCTGAAGAACTTTGCCATTGGTTAATACTAGCAGACATGTATGGTGTTATCAAGATTCGGGAATATTGTCTGGACACCATCGCTTGTAATTTTGAAACATTTGCTGATACTAAAGAATTCCGAGCAATGTTGTTGACTTTGCCTCCACCATCTGGAGACTCAAGTCTTCGTACCACTGTCCCGAGCATTCCTGGATCTGCTCTAAATACTGATCAAGGAAATCTTCTTGATGATTTACGTGAGAAATGGCTTGAAATCGAAGCTGCTGAGCTTGACAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGACTAGAGATGCTTATGCTTGTTGCAGAGCAAGAAAAATCAACAGACAGTGCTGATTCAGATGGTTTTGATGACACCCTTGGCTTTCTTCCCAATCACCACTCTGATTTAAGGTGA 1719 0.4468 MTFVDELDLSDADLELDLAPSVPVKKVPNGDVFEASRAGDVERLRYLLEAGVNVNARDQWDSVALYYACLVGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLDPLQSSLRDTFLAGISSTQGSICSHFPPDVVFIVQGRPIQAHRVILSARSPFFKKKFATDWKERSEVRFSRERLSYPALYSLIHFFYSDRLEIAVDDMEDLVRICKVCKCESLQKFLEKEVIHQTYADYKALRDVDNSQKRYILQGLSLPEEDRLPAALHRILLIALANSTHESGQEDEIDKLISRMSAMQMAKSLDDLADVCVKVDRKIFRCHQVILASRSEYFKARLSHMKDFHEGKDELSVDILPCLEEHDLSMEAFEKMIEYMYTDRLQDINPDQAEEMLDVASRYLLFPLKRAVADVLLPHLELVSPEELCHWLILADMYGVIKIREYCLDTIACNFETFADTKEFRAMLLTLPPPSGDSSLRTTVPSIPGSALNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSTDSADSDGFDDTLGFLPNHHSDLR 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00785 572 ProSiteProfiles BTB domain profile. 148 215 IPR000210 GO:0005515
Cca03g00785 572 Gene3D Potassium Channel Kv1.1; Chain A 123 263 IPR011333 -
Cca03g00785 572 Gene3D Potassium Channel Kv1.1; Chain A 291 459 IPR011333 -
Cca03g00785 572 SUPERFAMILY Ankyrin repeat 34 111 IPR036770 -
Cca03g00785 572 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 16 543 IPR044515 -
Cca03g00785 572 ProSiteProfiles BTB domain profile. 320 396 IPR000210 GO:0005515
Cca03g00785 572 SUPERFAMILY POZ domain 143 240 IPR011333 -
Cca03g00785 572 CDD BACK 431 474 - -
Cca03g00785 572 SUPERFAMILY POZ domain 310 426 IPR011333 -
Cca03g00785 572 CDD BTB_POZ_ZBTB_KLHL-like 319 410 - -
Cca03g00785 572 ProSiteProfiles Ankyrin repeat profile. 35 59 IPR002110 GO:0005515
Cca03g00785 572 SMART BTB_4 148 245 IPR000210 GO:0005515
Cca03g00785 572 SMART BTB_4 320 427 IPR000210 GO:0005515
Cca03g00785 572 Pfam Ankyrin repeats (many copies) 34 81 IPR002110 GO:0005515
Cca03g00785 572 Pfam BTB/POZ domain 147 244 IPR000210 GO:0005515
Cca03g00785 572 Pfam BTB/POZ domain 317 423 IPR000210 GO:0005515
Cca03g00785 572 Gene3D - 32 117 IPR036770 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g00785 BTB 1.5e-16 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00785 K10520 - gmx:100812009 1015.76