Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00781 ATGGCCGAGTGTTCAAGAATCATGTTGTATTCTGCTCTGCTTCCCTGTTTCAGCCCCAAAAGCCATTGGGGAGAGCGCCACCTAAGAGTGTCACGCAAGCACCAAGTCCATTGCTCAGTGTCCGCAGGTGCCACCCAAGCGTCGGTGCCTTGGGGCTGCGAAATTGACTCCTTGGAGAACGCCTCGGCGTTGCAGCGGTGGCTCTCAGACTCGGGGCTGCCACCGCAGAAGATGGGCATAGAGAGAGTGGATGTGGGCGAGAGAGGACTCGTTGCTTTGAAGAACATTAGGAAAGGGGAGAAGCTGCTCTTTGTGCCTCCCTCACTTGTCATAACTCCAGATTCTGAGTGGAGCTGCTCGGAAGCTGGTGAAGTATTGAAAAGGAATTCAGTGCCAGATTGGCCTTTGCTTGCGACTTACCTCATAAGTGAAGCTAGCCTAATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTATTTGGAAGCTTCACAAATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATAGAGTCCTTCAAATGGTCATTTGGTATTCTTTTCTCCCGCTTGGTTCGTTTACCCTCAATGGATGGAAAGGTTGCTTTGGTTCCTTGGGCTGATATGCTGAATCATAGTTGTGATGTGGAGACATTTTTGGATTATGATAAGACGTCAAAGGGAATTGTCTTCATGACAGATCGGCCCTATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCAAATGGGGAGCTTTTGTTATCTTATGGATTTGTCCCAAAGGAAGGCGCTAATCCTAGTGATTCAGTTGAGTTGTCACTATCGCTGAAGAAATCTGATGCTTCCTATAAGGAGAAGCTAGAACTGTTGAAGAAATATGGATTATCAGCATCTCAGTGTTTTCCTATACAGATTACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTTAGTCCTTCAAGCATGAGGGGAAAATTTGAAGAGATGGCTGCTGCAGCATCAAATAATACCACCACCAAGAAGGATTTAAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGATAGCTGCGAATCCAGCATATCAAAATACAATAAGTTTTTACAGGCAAGTGGATCACTGGATTTGGATGTTACTTCTCCTAAATTACTCAACCGAAGGCTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTACTAGCGAGCGAAGGATATTATTTCGTGCTCAATATATACTGCGAAGAAAATTGAGGGACATAAGAGCTGGTGAATTAAGGGCCTTAAAAATATTCAACGGTTTCCGGAATTTTTTCCAATGA 1476 0.4329 MAECSRIMLYSALLPCFSPKSHWGERHLRVSRKHQVHCSVSAGATQASVPWGCEIDSLENASALQRWLSDSGLPPQKMGIERVDVGERGLVALKNIRKGEKLLFVPPSLVITPDSEWSCSEAGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCDVETFLDYDKTSKGIVFMTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPSDSVELSLSLKKSDASYKEKLELLKKYGLSASQCFPIQITGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNNTTTKKDLRYPEIEEQALQFILDSCESSISKYNKFLQASGSLDLDVTSPKLLNRRLFLKQLAVDLCTSERRILFRAQYILRRKLRDIRAGELRALKIFNGFRNFFQ 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00781 491 Gene3D set domain protein methyltransferase, domain 1 18 305 - -
Cca03g00781 491 ProSiteProfiles SET domain profile. 76 292 IPR001214 GO:0005515
Cca03g00781 491 PANTHER - 36 286 - -
Cca03g00781 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 36 286 - -
Cca03g00781 491 SMART set_7 76 298 IPR001214 GO:0005515
Cca03g00781 491 PIRSF RMT_SET 3 488 IPR011192 GO:0009507|GO:0030785
Cca03g00781 491 Pfam SET domain 88 292 IPR001214 GO:0005515
Cca03g00781 491 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 322 488 IPR036464 -
Cca03g00781 491 Gene3D - 311 478 IPR036464 -
Cca03g00781 491 SUPERFAMILY SET domain 60 309 IPR046341 -
Cca03g00781 491 CDD SET_RBCMT 75 306 IPR044431 GO:0016279|GO:0018022
Cca03g00781 491 Pfam Rubisco LSMT substrate-binding 325 458 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00781 Cca-Chr3 17112861 17120824 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00781 63 261 NAC Transcription Factor Family AT3G56570 23.383 2.72e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g00781 SET 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00781 - - gmx:100803319 886.715