Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00776 ATGACTTCCCCACGCAATGAACATCTCTTCTCCACTGCAACTCATTTCTTTAAGATTATCCTCGCAACACATGGAAGACTTAAGCTTCCAAAAGCATTCACAAGAAAATATGGAGATGGAATATCAAACCCTGTGTTTCTGAAGTCTCCAGATGGGACTGAATGGGAAATACATTGGAACAAGCATGATGGTGAGATTTGTCTTCAAAAGGGTTGGAAGGAGTTTGCCACATTTTATTCCCTAGATCATGGGCACTTGCTGTTGTTTGAATATAAGGGAACTTCTCATTTTGATGTGCACATATTTGACAATAGTGCCCTTGAAATAGACTATCCTTCCCATAATGGAAAGGACAACATTACTGTTGAATATGTTGAAATTTTTGATGACCAAAAGACTAGAGTGAAATCAACTCTATCATCTCCTCAACCTTGTAAGAAAATGAAAACGAGCATAACTACAAATGTTGAAAGAAGCACCAATGGGGTAAACTTGCATCAGCGTGTCCAAACCAGAAGTACTAGCTCTCAAAAGGCAAAACTAGATGAAGATGAGATTAAAATGGTGCAGTTAACTTCTACCTCTTTAAACAAAGCAACAGCTGTCAGATCTGAACATCCATCTTTCAAGCTTGTTATGAAGCCACCCTATATTAATGGATATTACCTGGATATACCACCACAGTTTTCAAAACAATATTTGAAGAAAACACATGCAGTTGTCCTCCTTAGGGTCTTGGATGGGAGAAGTTGGCCTGTTATTTATTCTGCTCCTAGAATTAATGGGGGGTGGCAGAAATTTGCGTTGGAAAATAATTTGAATGTGGGGGATGTTTGTGTTTTTGAGCTAATCCAGGAGATCCATAGCATTGCTTTCACAGTTTCCATCTTTCCAGGTGCAGAGAAACCAAGTTGCCCCATTTCACAAGTGAAAGCTAAAACTGAATTCAATGAAAATGCAAAAATAGATCATTCAAAATGCAGAATAGTGCGTCCTTCAACTAACTGGACAGGTGGAAGTTCAAGCCAAAGATCTTCACTGTTGCAAAGTCACACCAAGCCAAAGATTTTAACAACCAGAGCCCGTAAAAAAGCTAGCGAATTCACATCAGAAAATCCCTTTTTCACGGTCACTTTAACGAATCAGAAGAGACTAAAGACACCCAGATGCCCGTATGTGCCTAGTGAGTTTGTGAGAAAGTATTTTGTAAAGATGAAGCAGAATGTGATGATGATACAGTTTAAAAAGAAAGTGTGGCCTTTAAAGTTTGCATTTCATTCATGCGCTGTTTCGGGCATGTTGGCTGGTGGTTGGTCCTCATTTGCAACTGAAAATGAACTGCAACATGGAGATGTTTGTATCTTTGAGCTCGTCAATAGAGAAGATACAATACTTGATCTTCATGTTTTCAGAAATCATTGTAAGGTAATGCATTAG 1437 0.3869 MTSPRNEHLFSTATHFFKIILATHGRLKLPKAFTRKYGDGISNPVFLKSPDGTEWEIHWNKHDGEICLQKGWKEFATFYSLDHGHLLLFEYKGTSHFDVHIFDNSALEIDYPSHNGKDNITVEYVEIFDDQKTRVKSTLSSPQPCKKMKTSITTNVERSTNGVNLHQRVQTRSTSSQKAKLDEDEIKMVQLTSTSLNKATAVRSEHPSFKLVMKPPYINGYYLDIPPQFSKQYLKKTHAVVLLRVLDGRSWPVIYSAPRINGGWQKFALENNLNVGDVCVFELIQEIHSIAFTVSIFPGAEKPSCPISQVKAKTEFNENAKIDHSKCRIVRPSTNWTGGSSSQRSSLLQSHTKPKILTTRARKKASEFTSENPFFTVTLTNQKRLKTPRCPYVPSEFVRKYFVKMKQNVMMIQFKKKVWPLKFAFHSCAVSGMLAGGWSSFATENELQHGDVCIFELVNREDTILDLHVFRNHCKVMH 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00776 478 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Cca03g00776 478 PANTHER B3 DOMAIN-CONTAINING 11 297 - -
Cca03g00776 478 PANTHER B3 DOMAIN-CONTAINING 303 472 - -
Cca03g00776 478 CDD B3_DNA 15 103 IPR003340 GO:0003677
Cca03g00776 478 SUPERFAMILY DNA-binding pseudobarrel domain 368 473 IPR015300 -
Cca03g00776 478 ProSiteProfiles B3 DNA-binding domain profile. 376 473 IPR003340 GO:0003677
Cca03g00776 478 CDD B3_DNA 373 471 IPR003340 GO:0003677
Cca03g00776 478 SUPERFAMILY DNA-binding pseudobarrel domain 12 105 IPR015300 -
Cca03g00776 478 Gene3D - 10 106 IPR015300 -
Cca03g00776 478 CDD B3_DNA 207 298 IPR003340 GO:0003677
Cca03g00776 478 Gene3D - 357 473 IPR015300 -
Cca03g00776 478 Gene3D - 190 301 IPR015300 -
Cca03g00776 478 SUPERFAMILY DNA-binding pseudobarrel domain 203 297 IPR015300 -
Cca03g00776 478 ProSiteProfiles B3 DNA-binding domain profile. 208 300 IPR003340 GO:0003677
Cca03g00776 478 SMART B3_2 209 300 IPR003340 GO:0003677
Cca03g00776 478 SMART B3_2 381 473 IPR003340 GO:0003677
Cca03g00776 478 SMART B3_2 16 105 IPR003340 GO:0003677
Cca03g00776 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 303 472 - -
Cca03g00776 478 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 297 - -
Cca03g00776 478 Pfam B3 DNA binding domain 209 298 IPR003340 GO:0003677
Cca03g00776 478 Pfam B3 DNA binding domain 23 104 IPR003340 GO:0003677
Cca03g00776 478 Pfam B3 DNA binding domain 375 472 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00776 Cca-Chr3 16944771 16949382 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00776 344 471 B3 DNA Binding Superfamily AT3G18990 33.083 4.12e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca03g00776 B3 8.7e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00776 - - ccaj:109794243 670.618