Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00775 ATGTCCTCCAGAAAATCCGACAACCCTCACTCCGGCGACGGTGCCAGTCCCGGCAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACCTTCGTCAAGTACTTCGAGAAGTACGGCGACATAACGGACTCCGTTATCATGAAGGACCGCCACACGGGCCGGCCCAGGGGCTTCGGGTTTATCACCTACGCCGATCCCTCCGTCGTTGACCAAGTCATTCAAGAGAGCCACGTCATCAACGGCAAGCAGGTCGAGATTAAGAGGACCATCCCCAAGGGCTCCTCACAGGCTAACGACTTCAAAACCAAGAAGATTTTCGTCGGTGGCATTCCGACATCGGTTTCCGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTTGTGGAGCATGAGATTATACGGGACCACACCACAAAGCGATCCCGGGGTTTTGGCTTTATAGTTTTTGACAGTGATAAGGTTGTGGATAATATATTGGCGGATGGGAACATGATTGATATGGCTGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACTCAGCTTCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGTTTCAGTGGATTTGGCGATTCTTATGGAAGTTTTGGGGGTAGCGGTTACGGTCCTGGTTCTTATAGGTCACTtggaggttttggtggtaggcttggcgattatggtgggtatgggggtggagatgactttggtggtagttttgggggttatggtggtggcggtgctggtggCTATTCTGGTTATCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTATGGATCGTACATGGGGAGCCTTGGTGCTGGATATGGTGGTGGTGGGTTAGGTGCATATGGTCGAGGTGGTGGGGGCTATGGAAGCTATGGTGGTCCAGGTGCTGGTGGGGTTTATGAATCAGGCCCTAGTGCTGGTTATGGTGGAGCAGGAGGTGGAGTGTATCCTAGTAGAGGAAACTATGGTGGCAGTAGTCGTTACCATCCTTATGCAAGATAG 1059 0.4542 MSSRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGDITDSVIMKDRHTGRPRGFGFITYADPSVVDQVIQESHVINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSDKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNSASLPPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGFGGRLGDYGGYGGGDDFGGSFGGYGGGGAGGYSGYRGESSFGYSSRYGSYMGSLGAGYGGGGLGAYGRGGGGYGSYGGPGAGGVYESGPSAGYGGAGGGVYPSRGNYGGSSRYHPYAR 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00775 352 PANTHER OS08G0320100 PROTEIN 1 352 - -
Cca03g00775 352 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Cca03g00775 352 SMART rrm1_1 107 180 IPR000504 GO:0003723
Cca03g00775 352 SMART rrm1_1 19 90 IPR000504 GO:0003723
Cca03g00775 352 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 352 - -
Cca03g00775 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Cca03g00775 352 SUPERFAMILY RNA-binding domain, RBD 106 260 IPR035979 GO:0003676
Cca03g00775 352 Gene3D - 18 96 IPR012677 -
Cca03g00775 352 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Cca03g00775 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Cca03g00775 352 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 85 IPR000504 GO:0003723
Cca03g00775 352 Gene3D - 97 217 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00775 Cca-Chr3 16934798 16938690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00775 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 24.528 3.97e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00775 K12741 - gmx:100801373 402.134