Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00773 ATGGCCACCGTCAAGAAGGGAAAACCCGATCTCCGTAAGAAGGTTTTGCCTACCGTTATCGTCCGTCAGCACAAGCCTTGGCACCGAAAGGACGTAGTCTACATGTACTTCGAAGATAATGCTAGTGTGATTGTGAATCCCAAAGGTGAAATGAAAGGTTCTGCTATTACTGGTCCAATTGGGAAGGAGTGTGTTGATCTGTGGCCCAGGATTGCTAGTGCTGCCAATGCTATTGTTTAA 240 0.4667 MATVKKGKPDLRKKVLPTVIVRQHKPWHRKDVVYMYFEDNASVIVNPKGEMKGSAITGPIGKECVDLWPRIASAANAIV 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00773 79 Pfam Ribosomal protein L14p/L23e 2 79 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g00773 79 SUPERFAMILY Ribosomal protein L14 1 79 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca03g00773 79 SMART Ribosomal_L14_2 1 79 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g00773 79 Gene3D Ribosomal protein L14 1 79 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca03g00773 79 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 79 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g00773 79 PANTHER 60S RIBOSOMAL PROTEIN L23 1 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00773 Cca-Chr3 16929313 16929779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00773 1 79 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 91.139 1.37e-49 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00773 K02894 - tcc:18613077 151.369