Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00771 ATGGGTTATCTATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCAGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCCAACGCCCTTTCTAGGCGTCATTCACGGACCCTTTTATGTGAGAGATGCAATTCGGAACCTGCCTTTGTAAGGTGTGTTGAAGAGAAAATTTCTCTTTGTCAGAACTGTGATTGGTTGGGTCATGGCACCTCTACATCTTCTTCAGCACATAAGAGACAAGCAATCAATTGTTACTCTGGCTGCCCTTCAGCAGCGGAACTGTCTTCAATATGGTCATTTGTGTTAGATATCACTTCCATTAGTGAATCTACCTGTGAGCAAGAGTTAGGCTTAATGAGTATTAACGAGAACAACAACAAGAGGATTGGGGTTCCATCAGAAAACCAGAATGTGTCTGGTTCAAATCAAGTTACTGATCTGCCTGCTTTGGACAAGTCTTTGGTTGGTACATCTTCAATGCCCGAGTCAAGCTCCAAACCTCAAATTCTGGACCAGCCAGCTGGACCTGCCAATGAATGTCTGCCAAAGTTATACTGTCCTGCTACAAAAGGCCCTGCACTATGTGAAGATGATTATCTGTATGATGATTTCGACATGGATGAAGTGGATATAAATCTTGAGAGCTATGAAGAACTTTTTGGTGTGGCCCTTAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGAGACAAAGGACATGTCTGCTGGAGATTCCAATTGTCAGGATACTATTGCTGCTGAGGGGTCATCAATAGGAGTGATCAATGCAATGCAACCAGCTTGCAGCAATGCAGCATCTGCAGATTCCATTTTGAGTACTAAAACTGAACCAATTATTTGTTTCACGGGAAGGCAAGCCCAATCAAACCTTTCTTTTTCTGGCATTACTGGAGAGAATAGCACCGGAGACTATCAAGAGATTCAAGACTGTGGGGCTTCTTCAATGCTCCTCATGGGAGAACCTCCTTGGTTTACTCCTTGTCCTGAGAATTCCCTACAATCTGCCAACCGCAGTAATGCTGTCATGCGATACAAGGAAAAGAAGAAGACACGGAAGTTCGACAAAAAAGTGAGGTATGCCTCTCGCAAGGCAAGGGCAGATGTCAGAAGGCGTGTGAAAGGCAGGTTTGTGAAAGCCGGCGACGTCTACGATTATGACCCTTTGAGCGCAACCAGAAGCTTCTGA 1245 0.4418 MGYLCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSEPAFVRCVEEKISLCQNCDWLGHGTSTSSSAHKRQAINCYSGCPSAAELSSIWSFVLDITSISESTCEQELGLMSINENNNKRIGVPSENQNVSGSNQVTDLPALDKSLVGTSSMPESSSKPQILDQPAGPANECLPKLYCPATKGPALCEDDYLYDDFDMDEVDINLESYEELFGVALSHSEELFENGGIDSLFETKDMSAGDSNCQDTIAAEGSSIGVINAMQPACSNAASADSILSTKTEPIICFTGRQAQSNLSFSGITGENSTGDYQEIQDCGASSMLLMGEPPWFTPCPENSLQSANRSNAVMRYKEKKKTRKFDKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSATRSF 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00771 414 CDD Bbox1_BBX-like 4 47 - -
Cca03g00771 414 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cca03g00771 414 ProSiteProfiles CCT domain profile. 357 399 IPR010402 GO:0005515
Cca03g00771 414 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cca03g00771 414 MobiDBLite consensus disorder prediction 164 179 - -
Cca03g00771 414 CDD Bbox1_BBX-like 47 90 - -
Cca03g00771 414 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 414 - -
Cca03g00771 414 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cca03g00771 414 SMART bboxneu5 48 90 IPR000315 GO:0008270
Cca03g00771 414 MobiDBLite consensus disorder prediction 162 181 - -
Cca03g00771 414 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 414 - -
Cca03g00771 414 Pfam CCT motif 357 399 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00771 Cca-Chr3 16808289 16815135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00771 1 414 C2C2-CO-like Transcription Factor Family AT3G07650 56.440 5.34e-157 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Cca03g00771 CCT 1.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00771 - - gmx:100800832 734.176