Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00760 GCCAAGGGATAACTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGTAACAAGGATATTTCGGGGAAGATTCGCATCAAGTGTGTTTTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCTCACAAAAGCAATCATCCATATCGGACTATGGATAATCTATCTTTTCCACTTATGTGTCCAGATTGGAATACAGATGAAGAGATGTTACTTTTAGAGGGCATTGAAATGTATGGATTTGGGAATTGGAATGAAGTTACTGAGTATGTCGGAACAAAAAGCAAATTTCAATGTATTGATCACTACAATGCTGTATATATGAACTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGAGGAACTCTTTGCAATGGTGAAGGGACGTGAAGTCATGAAAGAAATTCCTCTAACTGCAGAGCTTACTCTGAAAGAAGAAATTCCCTTCTCTGATGGAATAAGCTACGAAGAGTCGAAGAAGGCAGAGATCTATAATCAAACAATGTCTAGGTTAACCTCAGAATGTGGCAAAGCTTACTCAAGTACAATTAAGAAGGCTTCCAATGTGAGCCAAAATAATGACGGAGTTAAGATGGAAGAGTCTCAAGCAGATCGGAGCATTGGAGAGAAGAAACCTAAATTATCTGGGGAAGATAGGCCTTCTATGACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGACATTGAATATGACAATGATGCAGAGCAAGTGTTGGCAGATATGGAATTTAAGGACACTGATACTGAAGCCGAACATAAAATGAAACTGCATGTGCTTCATATCTACTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGATATTTATACTCGAAAGAGATTTACTTTATCCTGATCCTTTTGAGAAATCTCTCTTGCCTGAAGAGCTTCAAATATGTCAGCGTTACAAGGTCTTCACACGGTTTCACTCAAAACAAGAGCATCTGGATTTGCTAAAAACTATTATTGAAGAACACAGGCTGGTCAAAAGAATACAAGATTTACAGGAAGCCCGAATTGCTGGCTGTGTAACTGCTGCTGATGCTTATCGATTTATTGAACAAAAGAGGACAAAGGAAGCTGAATCGAGTGCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCCAAGACATTACTGAGGCCAAATTATCTCAAAGGAGAACTTGATACTAGTCCGCGGGGCCTTCAAAAGGGGACTTCAGCTTTATTTGCTGGTGCCAAGGATTCACCTGCTGCCATACAAACCATCACAAGGTCGCTAGAAGAGTGGGATATCAGTGGATTTGCTGGGGCTGAATTACTATCCGAATCTGAGAAAAAGCTTTGTAACGAGATCAGAGTTCTACCGTCGCACTATCTCAACATGCTGCAGACCATGTCATCCGAAATTTCAAAGGGCAATGTGACCAATAAATCTGATGCACGTACACTGTTTAAGGTAGAGCCAAGCAAGGTGGATAGAGTCTACGATATGCTTGTGAACAAAGGAGTTGTGCAAACATAG 1574 0.4034 QGITNSKVSLYHCNYCNKDISGKIRIKCVLCQDFDLCIECFSVGAEVTPHKSNHPYRTMDNLSFPLMCPDWNTDEEMLLLEGIEMYGFGNWNEVTEYVGTKSKFQCIDHYNAVYMNSPCFPLPDLSHVMGKSREELFAMVKGREVMKEIPLTAELTLKEEIPFSDGISYEESKKAEIYNQTMSRLTSECGKAYSSTIKKASNVSQNNDGVKMEESQADRSIGEKKPKLSGEDRPSMTELSGYSFKREEFDIEYDNDAEQVLADMEFKDTDTEAEHKMKLHVLHIYSKRLDERKRRKIFILERDLLYPDPFEKSLLPEELQICQRYKVFTRFHSKQEHLDLLKTIIEEHRLVKRIQDLQEARIAGCVTAADAYRFIEQKRTKEAESSACKESGQIGTSAKTLLRPNYLKGELDTSPRGLQKGTSALFAGAKDSPAAIQTITRSLEEWDISGFAGAELLSESEKKLCNEIRVLPSHYLNMLQTMSSEISKGNVTNKSDARTLFKVEPSKVDRVYDMLVNKGVVQT 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00760 523 Gene3D - 69 118 - -
Cca03g00760 523 SMART zz_5 7 52 IPR000433 GO:0008270
Cca03g00760 523 ProSiteProfiles Zinc finger ZZ-type profile. 8 64 IPR000433 GO:0008270
Cca03g00760 523 SMART sant 67 116 IPR001005 -
Cca03g00760 523 MobiDBLite consensus disorder prediction 212 232 - -
Cca03g00760 523 PIRSF Txn_adaptor_ADA2 1 523 IPR016827 GO:0003713|GO:0006357|GO:0035065
Cca03g00760 523 ProSiteProfiles SWIRM domain profile. 437 523 IPR007526 GO:0005515
Cca03g00760 523 SUPERFAMILY RING/U-box 11 74 - -
Cca03g00760 523 CDD SANT 71 111 IPR001005 -
Cca03g00760 523 ProSiteProfiles SANT domain profile. 66 118 IPR017884 -
Cca03g00760 523 Pfam Zinc finger, ZZ type 11 51 IPR000433 GO:0008270
Cca03g00760 523 ProSiteProfiles Myb-like domain profile. 71 114 IPR001005 -
Cca03g00760 523 Pfam Myb-like DNA-binding domain 70 111 IPR001005 -
Cca03g00760 523 SUPERFAMILY Homeodomain-like 439 522 IPR009057 -
Cca03g00760 523 ProSitePatterns Zinc finger ZZ-type signature. 13 40 IPR000433 GO:0008270
Cca03g00760 523 Gene3D - 437 522 IPR036388 -
Cca03g00760 523 SUPERFAMILY Homeodomain-like 64 117 IPR009057 -
Cca03g00760 523 CDD ZZ_ADA2 11 59 IPR041983 -
Cca03g00760 523 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 1 522 - -
Cca03g00760 523 Gene3D - 4 60 IPR043145 -
Cca03g00760 523 MobiDBLite consensus disorder prediction 204 237 - -
Cca03g00760 523 PANTHER TRANSCRIPTIONAL ADAPTER ADA2B 1 522 IPR034318 GO:0003713|GO:0006357|GO:0035065
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00760 Cca-Chr3 16360756 16401275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00760 7 520 EF-hand Containing Proteins AT3G07740 54.442 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g00760 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00760 K11314 - gmx:100779424 936.021