Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00753 ATGGAGGAAAGGAGAGTGAACATAATCGCTGCTACATCAGTGATTACACTGATTATTCTCATAATTGTTGCTCGTGTCACGTTGAAGCTCTCAAAGGCCTTCTTCCTCTTTTTCGGTGCTGGTGTTGCTGTGATTCTTGCAGTGTTCGTTTATGTATTTGTGAGCATAAGTCACAACCGCAGAAGGAGGGTGTTGGAGTCAGAGATGAAATCTGAAGGCCAAGAACTTCGCATAGAGTACAGTTTCTTGAGGAAAGTTGCAGGGGTTCCGGTTAAGTTCAGATACAAGGAGCTTGAGGAAGCCACTGATGGGTTTCAATCACTGATTGGAAAAGGTGCTTCTGCTTCGGTTTTCAAAGGCATTCTCAACGATGGAACTTCGGTTGCCGTGAAACGGATCAATGATGCAGAGGAAAGAGGGGAGAAGGAGTTCAGATCAGAGGTTGCAGCCATAGCTAGTGTGCATCATGTGAACCTTGTGAGGCTATATGGCTATTGTAATGCTCCTTCAGCACCTAGGTACCTTGTTTATGAATATGTCTCAAATGGGTCCTTGGATTGTTGGATTTTTCCCAAAAGGGTATCTCAAACGCGCCGTGGTGGGTGTTTGTCGTGGAATTTGAGGTACCAAGTTGCTGTTGATGTTGCCAAGGGACTTGCTTATCTTCACCATGATTGCAGGTCAAGGATCTTGCACCTTGATGTGAAGCCAGAGAATATACTCTTGGATGAGAATTATAGAGCTCTTGTTTCAGATTTTGGCCTTGCAAAGCTTATTGGAAAGGATGAAAGCTACAAGGTTATGTCTACTATTAGAGGAACAAGAGGGTACTTGGCTCCTGAGTGGCTCTTAGAGCAAGGTGTTTCGGATAAGACTGACATATATAGTTATGGGATGGTTCTCCTGGAGATTGTTGGAGGCAGGAAAAACGTGTGCTTGGTGGAAGATGAAAGGGGCAAGTCCAAGAGAAAGTGGCAGTACTTTCCCAAGATTGTGAATGAGAGAGTGAGGGAGGGAAAGTTCATGGAAATTGTTGATCGTAGGTTGTTGGAATGTGGGGGTGTTGATGAGAGTGAGGTTAGGAGAATGGTTTATGTAGCTTTGTGGTGTGTGCAAGAGAGGCCCAGAATTAGGCCCAGCATGACCCAAGTGGTTGATATGCTTGAAGGGCGTGTGAGAGTGGAGCTTCCACCTGATACCAGAATGGTTACTGTTGATTTGCTAGGTGTGAATGATAGTGGAACTGATAGTAATAGCATACCAAGGTTGGACTCTGTGTCGGGTCAAAGAACAGAAAGCAATGCTGAGTGCACATCTACCTACTCCTTTGCTACAACTGTTTTGTCTGGAAGATAG 1356 0.4484 MEERRVNIIAATSVITLIILIIVARVTLKLSKAFFLFFGAGVAVILAVFVYVFVSISHNRRRRVLESEMKSEGQELRIEYSFLRKVAGVPVKFRYKELEEATDGFQSLIGKGASASVFKGILNDGTSVAVKRINDAEERGEKEFRSEVAAIASVHHVNLVRLYGYCNAPSAPRYLVYEYVSNGSLDCWIFPKRVSQTRRGGCLSWNLRYQVAVDVAKGLAYLHHDCRSRILHLDVKPENILLDENYRALVSDFGLAKLIGKDESYKVMSTIRGTRGYLAPEWLLEQGVSDKTDIYSYGMVLLEIVGGRKNVCLVEDERGKSKRKWQYFPKIVNERVREGKFMEIVDRRLLECGGVDESEVRRMVYVALWCVQERPRIRPSMTQVVDMLEGRVRVELPPDTRMVTVDLLGVNDSGTDSNSIPRLDSVSGQRTESNAECTSTYSFATTVLSGR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00753 451 SUPERFAMILY Protein kinase-like (PK-like) 86 389 IPR011009 -
Cca03g00753 451 Gene3D Transferase(Phosphotransferase) domain 1 180 396 - -
Cca03g00753 451 PANTHER RECEPTOR-LIKE KINASE 1 451 - -
Cca03g00753 451 ProSiteProfiles Protein kinase domain profile. 103 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00753 451 Gene3D Phosphorylase Kinase; domain 1 66 179 - -
Cca03g00753 451 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Cca03g00753 451 SMART serkin_6 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00753 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cca03g00753 451 Pfam Protein kinase domain 107 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00753 451 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 1 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00753 Cca-Chr3 16080079 16081578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00753 1 400 Receptor kinase-like Gene Family AT5G20050 62.779 3.06e-174 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca03g00753 Pkinase 8.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00753 - - gmx:100791152 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00753 03 16080079 16081578 Cca03g00753 03 16080079 16081578 ECH
Cca11g02135 11 47181436 47182782 Cca03g00753 03 16080079 16081578 PCT