Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00742 ATGAAAGATCGAGAGGCAATACCTTTAATCTCTATGAAGATCGGGAAGAAGCGCATGAAGAAGTTCACGTGCCCCAAAAGTGATCGCAAAATCTCCGTCAAGCCAAGTTTGGTGTGGACCAAAGGACAAGAAAACATGCCATATTTACCTAATGGTTTCAAGAAATTTGTTATGCACAATGGGAAAGACTTGGAACTTCTTATGATGCATAATAGGACATACTGTAATAAGATTGCTCACAGTGTGTCCACAAGGAAGAGGAAAGACTTAGTTGAAAGAGCTGTTCAACTTGATGTTGTTGCAAAAAACAAAGCAACCAGGCTTCATAGCTAG 333 0.3994 MKDREAIPLISMKIGKKRMKKFTCPKSDRKISVKPSLVWTKGQENMPYLPNGFKKFVMHNGKDLELLMMHNRTYCNKIAHSVSTRKRKDLVERAVQLDVVAKNKATRLHS 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00742 110 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 46 110 IPR001515 GO:0003735|GO:0005840|GO:0006412
Cca03g00742 110 PANTHER 60S RIBOSOMAL PROTEIN L32-1 6 43 - -
Cca03g00742 110 PANTHER 60S RIBOSOMAL PROTEIN L32-1 46 110 - -
Cca03g00742 110 SUPERFAMILY Ribosomal protein L32e 8 108 IPR036351 -
Cca03g00742 110 Pfam Ribosomal protein L32 48 100 IPR001515 GO:0003735|GO:0005840|GO:0006412
Cca03g00742 110 SMART Ribosomal_L32e_2 19 103 IPR001515 GO:0003735|GO:0005840|GO:0006412
Cca03g00742 110 PANTHER 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N 6 43 IPR001515 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00742 Cca-Chr3 15371421 15371822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00742 6 110 Cytoplasmic Ribosomal Protein Gene Family AT4G18100 52.344 1.41e-37 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00742 K02912 - gmx:100306401 138.658