Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00739 ATGGCATCACATGCAGAACTAAGCATGGATTACAAGCCCTATAGCTATTCCACACTGCTGCAATCATTTACAGATCAAACTGATCAAACCTACAAGCTCGAAGAGTTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAAGCCTTCAGATCAGGCCAAGGCACAAGGCCAGTTCTTGAAGAATTCATACCCATAAAGCACCATCCAAACTCTCAAGAGAGCACTCATGAGAAGGCTTCAAACATATCTGACAAGGCGAATTGGATGACATCAGCTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACCACAATCCACAATTACATCACAAACAGAAGGAGCTGATGTTGGCTTTAGCGTGAGCCCTAAGCTAGCCCTAGACAACAAACATAGGAATGGAGGAGCCTTTTTACCATTCTCAAAAGAACGAAACGTTTGCCAAGGCTTAAAGGGTCTTCCTGAGTTGGCCCTTGCATCTTCTGAGAAGGAAACGGAGAAGAAATGTGAAGAGGAAGAGAAATGTTCCAAAAGGGAAAATTCAGGCACAGGAGGGTGTTGTGAAGATCAGGGAAAAAGTGATGCAGTTGCATCTGAGGCACAAACAACGAATACTAACACTACTGGCCAAACTCATAGGAAAGCAAGAAGGTGTTGGTCACCGGACTTGCACCGACGGTTTGTTAATGCTCTTCAAATGCTTGGTGGATCTCAAGTGGCCACCCCGAAACAGATTAGGGAGATGATGAAGGTTGAGGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACGTTAGAAGACCAATTCCAAGCCTACAACCCGGAGCAGCCACGCCTCAAGTTGTAGTTGTAGGAGGAATTTGGGTGCCACCGGAATATGCCGCAGTTGCATCCGCGGCACATTCGGGTGGGCCCACATTTTATAGTCCACATCTAACTCCACAAGCGCCACCTCCACACTACTGTGCAGCCACCCCAGTATCACAAGAGTTTTACAATACAGTATCATCGTTGTCGTTGCCACCACCGTCACAAGATCAAACCATCCACCACCACTTTCACATGTTCAACACAGCACCGCAGACACAAAGCTCACCGGAATCCGGTGTTCGGAGCGGTGGTGACAGGTCGGAGAGCATTGAGGATTGGAAGTCGGAGAGTAGTAGCTGGAAAGGAGAGAGTAGAGAGAAGAAAGGGTTAGCAGTACTAAGAGATCAAGAAGGGGAAGAGAGTTTTGGGAGTGAGATCACTCTTAAATTCTAG 1356 0.4727 MASHAELSMDYKPYSYSTLLQSFTDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSGQGTRPVLEEFIPIKHHPNSQESTHEKASNISDKANWMTSAQLWSQASEGTKPQSTITSQTEGADVGFSVSPKLALDNKHRNGGAFLPFSKERNVCQGLKGLPELALASSEKETEKKCEEEEKCSKRENSGTGGCCEDQGKSDAVASEAQTTNTNTTGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIREMMKVEGLTNDEVKSHLQKYRLHVRRPIPSLQPGAATPQVVVVGGIWVPPEYAAVASAAHSGGPTFYSPHLTPQAPPPHYCAATPVSQEFYNTVSSLSLPPPSQDQTIHHHFHMFNTAPQTQSSPESGVRSGGDRSESIEDWKSESSSWKGESREKKGLAVLRDQEGEESFGSEITLKF 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00739 451 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 451 IPR044787 GO:0003700|GO:0006355
Cca03g00739 451 MobiDBLite consensus disorder prediction 405 445 - -
Cca03g00739 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 237 297 IPR017930 -
Cca03g00739 451 Coils Coil 33 53 - -
Cca03g00739 451 MobiDBLite consensus disorder prediction 389 403 - -
Cca03g00739 451 MobiDBLite consensus disorder prediction 389 451 - -
Cca03g00739 451 Gene3D - 239 296 - -
Cca03g00739 451 SUPERFAMILY Homeodomain-like 237 298 IPR009057 -
Cca03g00739 451 Pfam Myb-like DNA-binding domain 242 293 IPR001005 -
Cca03g00739 451 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 451 - -
Cca03g00739 451 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 240 295 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00739 Cca-Chr3 15135647 15138979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00739 1 451 G2-like Transcription Factor Family AT2G03500 49.266 4.99e-122 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca03g00739 Myb_DNA-binding 4.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00739 - - gmx:100815048 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00739 03 15135647 15138979 Cca03g00739 03 15135647 15138979 ECH