Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00731 ATGCAATCTCAAACTTCATCAGATACGTTTTTTCTCTCTCACAATGGTAATGACCAAATTTCCTATTATGACCCAGCATTTTTCTACACAAGACCCTTTACTATTGACTCTCAAAGCAAACCTACATCAAAACAAGAAAACAACTACCATGACctcccttctccccctcctttgtcctttttccactttccctCACCCCCATTTGAAGAAACTCAATTTTTCCTCCAACAGCACCACGATTTTCTTCTTCAGTCTCACCACCAAGCTCAACCTCAAGCCACTGAGCCAGAACCTTTTATGGAGGCTTCTGTTAGAAGCAGTGATCAGATCCCAAGAAAAAGAACTGGCAAGAGAGATAGGCACAGCAAGATCAACACTGCAAGAGGATTGAGGGATCGGAGAATGAGACTTTCACTTGAAGTTGCAAAGAGGTTTTTCGGCTTGCAAGATATGCTAGGCTTCGACAAAGCTAGCAAGACCGTGGAGTGGCTACTGAACCAAGCAAAAGATGAAATCAACCGTGTGGCaagagagaagaaaaaggacaagaagaagaaTCATGATGATGATCACAATTGTGGTGCCAAGAGTGGTGCTTCTTCATCAAGTTCGGAATGTGAAGAGGGTGTGTCTAGTGTTGATGAGGTTGTGGTTAGTGGAGGTCGAGAACAACAAGAGGAGAGGGTGGACAAGGTTGTGAAAAGAAAGGTCAAGCATTGTAGGGCATTCCACCCTCTTGCAAAGGAGTGTagggaaagggcaagggaaagggcgagagagagaacaagagaaaAGATGAGAACTCGTGGAGTGCTACTTTCTGATGAATCAACGAAATGTGGAGAAGAAACAAATCAAGATCTGACTCAATTGGGTTCTTGGAACCCCTTTGAAAGTGGTACCAAGACCCATAGTGTGCACTCTTCCTTGGACGTAATCATCACTGAAGCTAAAGAACATCCAAAGGAGCATTTGGAGACTCATGTACAGGCCATGGCACatgatgatgatgatgatgatTCTTTGGTTATTTTGAACAAATGGAGCCCCTCCTTGATTTTCAATGGCTCTGGATTCTCTCATGAACACCAATTTGCAGAATTTCTGTCCTTGGGAAAACCGTGGGAGGCATAA 1134 0.3854 MQSQTSSDTFFLSHNGNDQISYYDPAFFYTRPFTIDSQSKPTSKQENNYHDLPSPPPLSFFHFPSPPFEETQFFLQQHHDFLLQSHHQAQPQATEPEPFMEASVRSSDQIPRKRTGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKDEINRVAREKKKDKKKNHDDDHNCGAKSGASSSSSECEEGVSSVDEVVVSGGREQQEERVDKVVKRKVKHCRAFHPLAKECRERARERARERTREKMRTRGVLLSDESTKCGEETNQDLTQLGSWNPFESGTKTHSVHSSLDVIITEAKEHPKEHLETHVQAMAHDDDDDDSLVILNKWSPSLIFNGSGFSHEHQFAEFLSLGKPWEA 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00731 377 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 37 341 IPR005333 GO:0003700
Cca03g00731 377 ProSiteProfiles TCP domain profile. 117 175 IPR017887 -
Cca03g00731 377 MobiDBLite consensus disorder prediction 177 194 - -
Cca03g00731 377 PANTHER TRANSCRIPTION FACTOR TCP18 37 341 - -
Cca03g00731 377 Pfam TCP family transcription factor 116 268 IPR017887 -
Cca03g00731 377 Coils Coil 165 185 - -
Cca03g00731 377 MobiDBLite consensus disorder prediction 88 129 - -
Cca03g00731 377 MobiDBLite consensus disorder prediction 177 230 - -
Cca03g00731 377 MobiDBLite consensus disorder prediction 195 209 - -
Cca03g00731 377 Coils Coil 377 377 - -
Cca03g00731 377 ProSiteProfiles R domain profile. 248 265 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00731 Cca-Chr3 14452771 14454446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00731 35 262 TCP Transcription Factor Family AT3G18550 37.308 6.04e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca03g00731 TCP 1.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00731 - - gmx:100798555 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00731 03 14452771 14454446 Cca11g02102 11 46569339 46570765 ECH
Cca07g02352 07 52102017 52103221 Cca03g00731 03 14452771 14454446 ECH
Cca09g00438 09 10648652 10650630 Cca03g00731 03 14452771 14454446 ECH
Cca03g00731 03 14452771 14454446 Cca03g00731 03 14452771 14454446 ECH