Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00727 ATGGCAACCAAAAATCCTGCAGAGAAGAGGGAAGAGCCTACCAAAGGACTGTCTCATCTGACATCAATTTTAAAGCCACTTGAAGCCAAAACTACGGAGACTGAGAGACGAGCCTTGCAGGAGGCAGAAAGAGCTGCAAAAGCTGCTTCTAAAGCTGATGGAACCACAGCAGTTGCTGAATCTGGGGGAGCAGCCTCCAGTAAAAGTACGAGGCATTCTTCACAAAAGAAAGATGGTCTTCTTTCTATGTCGTTAGTAGCTACCAACAAGAAATCAGGAGATCGTCCTTTGGAGAAAAAGAAAAAACATGCTCCTCTTCCACAAATGCAATTCGATGATGAAAACAGAGTGGAAAAGGCAAGAAGGCGTGCAGTATTTGATCAAACTGAAGCTAGACATAGAGTTGAATTATTTCTCCATTTGCCTCAATATGAACATGGGACTCGGCTTGCTAAACTTGAATCGATGTTTTTCCAACTTGATTCACTGCATCCTGCTGTGTGGAAGGTTGGATTGCGTTATTTGTCAGGAGATATATCAGGGAGTAATGCCCGATGCATTGAAATGCTCTTAGCATTTCAGGAAGCCATTAAAGACTACTCCACACCGCCTGCTAAAGTCCTTGTTAAGGATTTAACTGCAAAAATCAATAGTTATGTTTCATTTTTTGCTGAATGCAGACCTCTTTCTATTAGCATGGGAAATGCTATTAGGTTTGTAAAGAGTTGTATTGCAAATTTGCATTCAAGTCGTACTGAATCTGAAGCAAAAGAAACTCTTAGTTCACATATTAATCAATTCATTAATGAAAGAATAATTCTTGCTGATAAGGTGATTGTTGGACATGCTGCTACAAAGGTTAGCGATGGAGATGTTCTTCTTACATATGGATCATCATGTGTTGTTGAGATGATTCTTTTACATGCCCATGAAATTGGGAAACAGTTTCGTGTAGTGGTGGTAGACTTGCGACCAAAGTTTGAAAGCCAGGCTTTACTTCGTAGGCTGGTGGCTAAGGGCCTGAGTTGTACATATACTCATGTAAATGCTGTTTCTTATGTCATGCATGAGGTCACACGAATTTTTCTGGGAGCTTCTTCCATTATGTTTAATGGAACTGTAAATTCAAGGGTGGGCACTGCGTGTGTTGCAATGGTGGCTCATGCATATGGTGTTCCGGTATTGATCTGTTGTGAAGCTTACAAGTTTCATAAAAGGGTGCAGCTTGATTCAATATGTTCAAATGAACTAGGTGACCCAGGTGCTGTTGCCGTCGTTCCTGGAAGAATGGATATCAATTATCTGGACAATTGGACTAGTCAAGAAAACTTGCAGCTTCTGAATTTGTATTATGATGCTACTCCTTCAGATTACGTATCGGCCATTGTGACTGATCATGGAATTATCCCTCCTACAAGTGTGCCCGTAATTTTGCGCGTTGCAAAGAAAAGTCAGCAAGTGGCTTTAACTGCTCACAACCGATTTTGA 1488 0.4099 MATKNPAEKREEPTKGLSHLTSILKPLEAKTTETERRALQEAERAAKAASKADGTTAVAESGGAASSKSTRHSSQKKDGLLSMSLVATNKKSGDRPLEKKKKHAPLPQMQFDDENRVEKARRRAVFDQTEARHRVELFLHLPQYEHGTRLAKLESMFFQLDSLHPAVWKVGLRYLSGDISGSNARCIEMLLAFQEAIKDYSTPPAKVLVKDLTAKINSYVSFFAECRPLSISMGNAIRFVKSCIANLHSSRTESEAKETLSSHINQFINERIILADKVIVGHAATKVSDGDVLLTYGSSCVVEMILLHAHEIGKQFRVVVVDLRPKFESQALLRRLVAKGLSCTYTHVNAVSYVMHEVTRIFLGASSIMFNGTVNSRVGTACVAMVAHAYGVPVLICCEAYKFHKRVQLDSICSNELGDPGAVAVVPGRMDINYLDNWTSQENLQLLNLYYDATPSDYVSAIVTDHGIIPPTSVPVILRVAKKSQQVALTAHNRF 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00727 495 MobiDBLite consensus disorder prediction 92 109 - -
Cca03g00727 495 MobiDBLite consensus disorder prediction 29 48 - -
Cca03g00727 495 Gene3D - 275 480 IPR042529 -
Cca03g00727 495 MobiDBLite consensus disorder prediction 60 89 - -
Cca03g00727 495 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g00727 495 Pfam Initiation factor 2 subunit family 179 471 IPR000649 GO:0044237
Cca03g00727 495 SUPERFAMILY NagB/RpiA/CoA transferase-like 164 479 IPR037171 -
Cca03g00727 495 Coils Coil 32 52 - -
Cca03g00727 495 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 9 484 - -
Cca03g00727 495 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 9 484 - -
Cca03g00727 495 MobiDBLite consensus disorder prediction 1 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00727 Cca-Chr3 14304977 14309622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00727 12 483 Eukaryotic Initiation Factors Gene Family AT5G38640 65.344 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00727 K03680 - gmx:100778711 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00727 03 14304977 14309622 Cca11g02095 11 46478437 46482831 ECH
Cca03g00727 03 14304977 14309622 Cca03g00727 03 14304977 14309622 ECH