Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00726 ATGAAGCTTTTGAAGCTGCAATACAGGAAACATTTGCCAAATTGGTTGAAGAAGGGAAGGTCCCACCTGTTAAAGAGTTTACTCCTCCTCCAATCCCTGAGGACCTTAACATTGCAATTAGGAGTGGGAAAGTACGTGCTCCAACTAACATTATTTCCACCATCTCTGATGACAGAGGTAATTGGTGTTTGTATAAATACTGAGTGGAGATTATTGATGGCAAGTATCTCAGAGGATACTGGAGAAGAGACTCCATTACAGGTGCGTTTGAATGGAGTAGCAACTTTTATTGGCATAGTTGGCCTTACTGTAGTTGTTTCTGTCCTTGCAGTCCTCTTTGGAAGATACTTCTCTGGTCATACGAAAGATTTAAATGGAAAAGTACAATATGCCTCTAGCATATTGCCTGATGAAGATAAAGCGTTTTCTAAGTTATGTTATGGGAGTTATGACTAG 456 0.3991 MKLLKLQYRKHLPNWLKKGRSHLLKSLLLLQSLRTLTLQLGVGKYVLQLTLFPPSLMTEVIGVCINTEWRLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVVVSVLAVLFGRYFSGHTKDLNGKVQYASSILPDEDKAFSKLCYGSYD 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00726 151 PANTHER CALCIUM-TRANSPORTING ATPASE 9, PLASMA MEMBRANE-TYPE 60 131 - -
Cca03g00726 151 Gene3D - 27 138 - -
Cca03g00726 151 PANTHER CATION TRANSPORTING ATPASE 60 131 - -
Cca03g00726 151 SUPERFAMILY Calcium ATPase, transmembrane domain M 77 119 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00726 Cca-Chr3 14267352 14269220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00726 60 130 Primary Pumps ATPases AT5G57110 71.831 7.47e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00726 K01537 - gmx:100802659 106.686