Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00723 | ATGGCCGAAGCAGAGCACAACGATACCTCTTCGCCTGAGCGCGAGGACCAAACCAAAAGTAACAAGAAGAAGCTTCGCAAGAGGAAGAGGCCTCATAAAACCGAGCAGAAACAAGAGGAGGAGGAGAAGAATGACACTGCGCAAACACAAACCgaagatgaagaagaaaaagagacagaaacgaacaaCACCGTCACATCAGGAATCATGAGCACCGAGTCCTTCACCTCTCTGGAACTGTCCGAACCCACTTCCAAAGCCATTGCAGACATGGGCTTCCACCGCATGACTCAGATTCAAGCGAGGGCGATTCCGCCGCTTCTGGCCGGAAGCGACGTTCTCGGCGCGGCGAGAACCGGTGCCGGAAAAACCCTAGCGTTTTTGGTGCCGGCGGTGGAGCTTTTGCGCAGCGCGCAGTTCACGCCGCGTAACGGAACGGGTGTTGTTGTGATATGTCCGACCAGAGAGTTGGCGATTCAGACGCACGCGGTGGCGAGGGAGGTGCTGAAGTATCATTCGCAGACGCTAGGGTTGGTGATTGGAGGCTCCGGGAGGAAGGGGGAGGCTGAGCGCGTTGTTAAAGGGGTGAACCTGTTGGTGGCCACGCCGGGTCGCCTCCTCGACCACCTTCAAAACACGAAGGGGTTCGTGTTTAAAAACTTGAAGTGTCTCATCATTGATGAAGCTGACAGGATATTGGAATCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACTTACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGCTTATCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAACGTTTTGTTGTTCTATATTCATTTTTGAGGAGATACCAATCAAAGAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAGGTGTACTGGGTTGGACTGCTTAAATATTCATGGAAAACAGAAGCAACATGCCCGAACTACTACGTTTTTTAACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACAGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCACGTGGGGAAGGCGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGTGAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGAAAATGTACAATCTCAACTGGAGAAGTTGGTGGCTGGCATTTATCATTTGAACAGTATGGCTAAAGATGCATATAGGTCATATATATTAGCATATAATTCACATTCCATGAAAGATATATTCAATGTTCACCGGCTGGATTTACTGGCTGTAGCTGCTTCATTCTGTTTTTCAAACCCACCGAAGGTGAATCTGAACATAGATAGCAATGCTTCAAAGCATAGAAAGAAAATACGCAAAGTGGAAGGAAAGAGAAGATGA | 1617 | 0.4515 | MAEAEHNDTSSPEREDQTKSNKKKLRKRKRPHKTEQKQEEEEKNDTAQTQTEDEEEKETETNNTVTSGIMSTESFTSLELSEPTSKAIADMGFHRMTQIQARAIPPLLAGSDVLGAARTGAGKTLAFLVPAVELLRSAQFTPRNGTGVVVICPTRELAIQTHAVAREVLKYHSQTLGLVIGGSGRKGEAERVVKGVNLLVATPGRLLDHLQNTKGFVFKNLKCLIIDEADRILESNFEEEMKQIINLLPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLRCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAVKVPVKEYAFDDKKLENVQSQLEKLVAGIYHLNSMAKDAYRSYILAYNSHSMKDIFNVHRLDLLAVAASFCFSNPPKVNLNIDSNASKHRKKIRKVEGKRR | 538 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00723 | 538 | Coils | Coil | 37 | 57 | - | - | |
Cca03g00723 | 538 | CDD | DEADc_DDX18 | 84 | 281 | IPR044773 | GO:0003724|GO:0005524 | |
Cca03g00723 | 538 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cca03g00723 | 538 | Pfam | Helicase conserved C-terminal domain | 309 | 413 | IPR001650 | - | |
Cca03g00723 | 538 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 309 | 463 | IPR001650 | - | |
Cca03g00723 | 538 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 | 18 | 519 | - | - | |
Cca03g00723 | 538 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 145 | 435 | IPR027417 | - | |
Cca03g00723 | 538 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 73 | 101 | IPR014014 | GO:0003724 | |
Cca03g00723 | 538 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 104 | 279 | IPR014001 | - | |
Cca03g00723 | 538 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 225 | 233 | IPR000629 | - | |
Cca03g00723 | 538 | CDD | SF2_C_DEAD | 294 | 424 | - | - | |
Cca03g00723 | 538 | Pfam | Domain of unknown function (DUF4217) | 455 | 515 | IPR025313 | - | |
Cca03g00723 | 538 | SMART | DUF4217_3 | 454 | 517 | IPR025313 | - | |
Cca03g00723 | 538 | SMART | helicmild6 | 333 | 414 | IPR001650 | - | |
Cca03g00723 | 538 | SMART | ultradead3 | 92 | 297 | IPR014001 | - | |
Cca03g00723 | 538 | Gene3D | - | 290 | 533 | IPR027417 | - | |
Cca03g00723 | 538 | Pfam | DEAD/DEAH box helicase | 97 | 268 | IPR011545 | GO:0003676|GO:0005524 | |
Cca03g00723 | 538 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Cca03g00723 | 538 | PANTHER | RNA HELICASE | 18 | 519 | - | - | |
Cca03g00723 | 538 | Gene3D | - | 15 | 283 | IPR027417 | - | |
Cca03g00723 | 538 | MobiDBLite | consensus disorder prediction | 62 | 81 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00723 | Cca-Chr3 | 14210502 | 14217312 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g00723 | 73 | 432 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 31.044 | 1.35e-46 | 166 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00723 | K13179 | - | gmx:100798290 | 934.095 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g00723 | 03 | 14210502 | 14217312 | Cca03g00723 | 03 | 14210502 | 14217312 | ECH |