Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00717 ATGGGTGGTCAGAGAAGGAAGAAGCGCCACTTCAGCAGAATCCATGCATTCTCTTGTGGGAAAGCTTCATTCAAAGGGGAGCATTCACTCATAGGGGGTCCTGGATTCTCAAGGATTGTGTATTGCAACGAAGCAGAACGTGGTGAGGGGAGTCTTGTGAGTTATTATGGGGACAATTATGTGAGTACTACTAAGTATACTGTGGCTACTTTTCTGCCCAAGTCTTTGTTTGAGCAATTCAGGAGGGTGGCCAATTTTTACTTCCTTGTCTGTGCAATCCTGTCTTTTTTCCCGGTTTCTCCTTACTCCTCTGTCAGCAATGTTGTCCCTCTTGTGGTTGTGGTTGCTGCTACAATGGGGAAAGAGGCTCTTGAGGATTGGAGGAGGAAAAAACAGGATATAGATATGAATAACAGAAAGGTCAAAGTGCATCAAGGAGAAGGTGTTTTCGACTATTCCAAATGGAAGGATTTGAAAGTTGGAGACATAGTGAAGGTTGAAAAGGATGAATTTTTCCCTGCTGATCTCATCCTACTCTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACTACGAATCTTGATGGAGAAACAAATCTAAAAGTTAAACAAGCACTGGAAGAAACTTCAAAGTTGCAAGAAGACTCGAGCTTTCAAAATTTTAAGGCCATCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCATTTGTTGGGAATTTGGAGCTTGAAGAACAACTGTATCCTCTTGCACCTCAGCAGCTACTGCTTAGGGACTCAAAGCTGAGGAACACAGAATTTATCTATGGTCTTGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAACTCAACAGAGCCTCCATCCAAGAGAAGCACTGTTGAAAAAAGGATGGATAAAATCATCTACTTTCTGTTCTTTGTCTTATTTTTTATTTCTTTTATCGGTTCGATTTTCTTCGGGATTGCAACTAGGGAGGATCTTGAAAATGGAGTTATGAAGAGATGGTACCTCAGACCAGATGATACCACAATTTACTTCAATCCAAAGAAAGCACCAGTTGCAGCAATGCTGCAATTCTTGACTGCACTCATGTTGTACAGTTACTTGATTCCAATTTCTTTGTATGTTTCCATTGAAATTGTGAAAGTTCTTCAAAGCATTTTCATCAATCAGGATTTGCACATGTATTATGAGGAAACTGACCAGCCAGCGCATGCTCGGACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACCATACTTTCAGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTCATCAAGTGTTCTATTGCTGGGATTGCCTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGGAGAAAAGGTGTACCTATATTTCAAGAGTTGACAGAATATGACAATGTTCCACAGACTTCTGATGCAAAGTCTTCCATTAAAGGATTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGATCAATGAACCTCATGCCGATGTAATCCAGAACTTCCTGCGGCTGTTGGCAGTGTGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGCAAGGTTTCATATGAAGCCGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCAGAGAACTTGGATTTGAGTTTTATGAAAGGACACAGACAACTATTTCACTGCGTGAGTTCAATCCAAAATCAGGCAAGACAGCAGAAAGGTCCTACAAACTTCTAAATATATTAGAGTTTAGTAGTACAAGAAAGAGGATGTCAGTAATTATAAGAGATGAGGAGGGGAAACTGCTACTATTCAGCAAAGGAGCAGACAGTGTCATGTTTGAACGACTTGCAAGAGATGGTAGGGAGTTTATAGAGAAGACTAAGCAGCACATTGATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTGATGAAGAAGAGTACAATCTATTCAATAAAGAATTCATGGAGGCCAAAAACTTAGTGAGTGCAGATCGGGAGCAAATTGTGGAGGAAATATCAGAAAAGATTGAGAAGGATTTAATTCTTATTGGTGCTACTGCAGTTGAAGACAAACTTCAAAACGGGGTTCCCGAATGCATTGACAAGCTAGCACAAGCAGGAATTAAGCTATGGATTTTGACTGGTGATAAAATGGAGACAGCAATTAATATTGGGTTTGCTTGTAGTTTACTCAGACAAGGGATGAAGCAAATTACAATTAGTTCAGACACTCCAGAAGCCAAATCACTGGAGAAAGTGGAGGACAAGTCCACTGCTGCAGCGGCCATTAAGGCAAGTGTTCTTCATCAGTTAAAGAAAGGAAACGAATTATTTGCTAAATCTGATGAACACTCTGAGGCATTAGCTCTTATCATTGATGGGAAGTCTCTCACGTATGCACTAGAAGATGATGTAAAAGACTTGTTTCTTGAACTTGCCGTCGGTTGTGCATCTGTTATATGCTGCCGTTCATCCCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACTTGTAGTACAACTCTAGCAATTGGTGATGGAGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGGATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGCGATGTCAAGTGATATTGCAATTGCCCAATTTCGGTTTCTAGAGCGTTTACTTCTTGTGCATGGACATTGGTGCTACAGAAGAATCTCAACGATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGCTTCACACTTTTCTTCTACGAGATCTATGCCTCGTTCTCAGGGCAAGCTGCATACAATGACTGGTTCCTCTCACTCTACAACGTGTTCTTCACTTCGCTTCCTGTAATTGCCCTGGGAGTGTTTGACCAAGATGTGTCAGCTAGACTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATGTCCTATTCAGCTGGAAACGGATCCTTGGTTGGGCATTCAATGGAGTCTTGAGTGCTACCATAATATTCTTCTTCTGCATCAAGGCAATGGAGGATCAAGCATTCCGCAAAGGAGGGGAGGTTGCTGATCTGGAAGTTCTTGGTGCCACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCACTATCCATAAGTTACTTCACTTATCTACAACATTTGTTCATATGGGGTGGCATTCTTTTTTGGTACATATTTCTCTTGGTGTATGGAACCATGGACCCCTCTCTATCAACCACTGCCTATAAGGTCTTGATCGAAGAGTGTGCACCAGCACCATCTTACTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTTGCCTATGCTTCAATCCAAATGCGGTTCTGCCCCATGTTCCATCAAATGATACAGTGGATACGAAATGATGGCCAAACATCTGACCCGGAATACGTTAACATTGTGAGGCAGAGATCAATAAAACACACAACAGTTGGGTTCACTGCTCGTTTTGAAGCATCACATAGTTCGGGATCATTGAAGAGTGCTCAAGTCTAA 3588 0.4128 MGGQRRKKRHFSRIHAFSCGKASFKGEHSLIGGPGFSRIVYCNEAERGEGSLVSYYGDNYVSTTKYTVATFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSSVSNVVPLVVVVAATMGKEALEDWRRKKQDIDMNNRKVKVHQGEGVFDYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETTNLDGETNLKVKQALEETSKLQEDSSFQNFKAIIKCEDPNANLYSFVGNLELEEQLYPLAPQQLLLRDSKLRNTEFIYGLVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFFVLFFISFIGSIFFGIATREDLENGVMKRWYLRPDDTTIYFNPKKAPVAAMLQFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDLHMYYEETDQPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGIAYGQGVTEVERALARRKGVPIFQELTEYDNVPQTSDAKSSIKGFNFMDERIMNGNWINEPHADVIQNFLRLLAVCHTAIPEVDEETGKVSYEAESPDEAAFVVAARELGFEFYERTQTTISLREFNPKSGKTAERSYKLLNILEFSSTRKRMSVIIRDEEGKLLLFSKGADSVMFERLARDGREFIEKTKQHIDEYADAGLRTLILAYRELDEEEYNLFNKEFMEAKNLVSADREQIVEEISEKIEKDLILIGATAVEDKLQNGVPECIDKLAQAGIKLWILTGDKMETAINIGFACSLLRQGMKQITISSDTPEAKSLEKVEDKSTAAAAIKASVLHQLKKGNELFAKSDEHSEALALIIDGKSLTYALEDDVKDLFLELAVGCASVICCRSSPKQKALVTRLVKIKTCSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAAMSSDIAIAQFRFLERLLLVHGHWCYRRISTMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLSATIIFFFCIKAMEDQAFRKGGEVADLEVLGATMYTCVVWVVNCQMALSISYFTYLQHLFIWGGILFWYIFLLVYGTMDPSLSTTAYKVLIEECAPAPSYWLITLLVLVASLLPYFAYASIQMRFCPMFHQMIQWIRNDGQTSDPEYVNIVRQRSIKHTTVGFTARFEASHSSGSLKSAQV 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00717 1195 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1148 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca03g00717 1195 SFLD p-type atpase 407 914 IPR044492 -
Cca03g00717 1195 Gene3D - 700 903 IPR023214 -
Cca03g00717 1195 Gene3D - 539 699 IPR023299 GO:0000166
Cca03g00717 1195 Pfam Phospholipid-translocating ATPase N-terminal 40 106 IPR032631 -
Cca03g00717 1195 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Cca03g00717 1195 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1186 - -
Cca03g00717 1195 SUPERFAMILY Calcium ATPase, transduction domain A 142 285 IPR008250 -
Cca03g00717 1195 SFLD Haloacid Dehalogenase 407 914 - -
Cca03g00717 1195 SUPERFAMILY HAD-like 420 918 IPR036412 -
Cca03g00717 1195 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 488 701 IPR023299 GO:0000166
Cca03g00717 1195 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 830 946 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g00717 1195 Gene3D - 107 287 - -
Cca03g00717 1195 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Cca03g00717 1195 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Cca03g00717 1195 Pfam Cation transport ATPase (P-type) 522 624 - -
Cca03g00717 1195 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1140 IPR023298 -
Cca03g00717 1195 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Cca03g00717 1195 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Cca03g00717 1195 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00717 Cca-Chr3 13951416 13962714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00717 10 1187 Primary Pumps ATPases AT1G68710 69.785 0.0 1779
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00717 K01530 K14802 gmx:100797039 2144.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00717 03 13951416 13962714 Cca11g02077 11 46336613 46342291 ECH
Cca03g00717 03 13951416 13962714 Cca03g00717 03 13951416 13962714 ECH