Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00711 ATGAATCCAAATCCCTTGGTATCATATCTGGAATCATTAAACGACAACTCTCAATTCAAATTTCAAGAAGATGCTTGCCTCATTGAACTAGTCAAAAAGTATGGTATCAAGAGGTGGTCCATTATTTCCAAATACTTACCAGGTCGGATTGGAAAGCAATGCCGAGAAAGGTGGAACAATCATCTTGATCCAACTATAAAGAAGGATGCGTGGACAGAGGAGGAGGAAAAATACTTGCTTAGTGTCACCAACACTACACCAGAAGTGGCAATAGATAGCACTATTTAG 288 0.3924 MNPNPLVSYLESLNDNSQFKFQEDACLIELVKKYGIKRWSIISKYLPGRIGKQCRERWNNHLDPTIKKDAWTEEEEKYLLSVTNTTPEVAIDSTI 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00711 95 Pfam Myb-like DNA-binding domain 22 78 - -
Cca03g00711 95 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 66 IPR017930 -
Cca03g00711 95 Gene3D - 18 67 - -
Cca03g00711 95 PANTHER MYB PROTEIN-RELATED 20 81 - -
Cca03g00711 95 CDD SANT 22 62 IPR001005 -
Cca03g00711 95 PANTHER TRANSCRIPTION FACTOR MYB3R-2 20 81 - -
Cca03g00711 95 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Cca03g00711 95 ProSiteProfiles Myb-like domain profile. 22 62 IPR001005 -
Cca03g00711 95 SMART sant 15 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00711 Cca-Chr3 13628248 13629021 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00711 22 80 MYB Transcription Factor Family AT5G02320 67.797 1.88e-24 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g00711 Myb_DNA-bind_6 2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00711 - - ccaj:109793041 149.828