Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00707 ATGAGCAATCCTCATGCAGATGAAAGAGAGAAGTGTCAAAAGAAGAGAAAATCCACCATATGTGAGTCCTCTAGCCTTAGGACATCAAGGAGAAGATATTGCAACAACAAAAATGAAGAAGAGATGAACAAGGAAGTTTCAACAACATTGAAGCTTTACGATGACCCGTGGAAGATCAAGAAGACACTAACTGATAGTGATTTGGGAATCTTAAGTAGACTCTTGTTGGCTACAGATTTGGTCAAAAAACAAATTCTTCCTATGTTGGGTGTAGATCATGCAAGAGCTGCAGAAATCGAAGAAGGGACCCCAATTAGTGTGTGGGACATTGACACGAAATCCATGCACCAACTCATTCTAAAGCAATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAATGGAACCAAGATTTCGTGAGAAGAAGAGATCTAAAGAAAGGTGATGAGATAGGTTTTCATTGGGATCCATATAATTGTGTTTTCAATTTTTGTGTTCTTAAACGAGTTATGTCAGAGAATTAA 525 0.379 MSNPHADEREKCQKKRKSTICESSSLRTSRRRYCNNKNEEEMNKEVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLATDLVKKQILPMLGVDHARAAEIEEGTPISVWDIDTKSMHQLILKQWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCVFNFCVLKRVMSEN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00707 174 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 169 - -
Cca03g00707 174 Gene3D - 56 170 IPR015300 -
Cca03g00707 174 SUPERFAMILY DNA-binding pseudobarrel domain 55 166 IPR015300 -
Cca03g00707 174 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 7 169 - -
Cca03g00707 174 CDD B3_DNA 57 168 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00707 Cca-Chr3 13520996 13521520 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00707 59 154 RAV Transcription Factor Family AT1G50680 33.981 2.07e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00707 - - gmx:102670334 319.701