Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00684 ATGGGGAGAGGAAGGGTGCAGTTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTTACGTTCTCAAAGAGAAGGTCTGGTTTGCTCAAGAAAGCACACGAGATCTCTGTGCTTTGTGATGCTGAAGTGGCTCTCATAGTCTTCTCCACCAAAGGAAAACTCTTTGAGTACTCTAGTGATCCCTGTATGGAACGAATTCTTGAACGGTATGAGAGGTATTCATATGCGGAGAGGCAACTTGTTGCAAGTGAACCACAAACTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTGGAAGTCCTACAGAAAAATCAAAGAAATTTTATGGGACAAGATTTGGATGGCCTAAGCATCAAAGAGCTTCAGAATTTGGAGCATCAGCTTGATAGTGCTCTCAAACACATTAGATCACGGAAGAACCAACTCATGTATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCCCTACAGGAACAAAACAACACTCTCTCTAAGAAGATAAAGGAGAAAGAGAAGGCACTAGCCCAACGGGCACAACTGGAACGACATGGTGATGAAATGGATCTAACTTCTTCTGTTCTTGTACCTCAACCAGTGGAAACCTCAAATATTAGAGGCTCCTCACAAGTCAGAGGTGATGGAGATAATGAAGGAACCCCAACTCCAACTCGAGCCAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 732 0.429 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSSDPCMERILERYERYSYAERQLVASEPQTENWTLEHAKLKARLEVLQKNQRNFMGQDLDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKDKALQEQNNTLSKKIKEKEKALAQRAQLERHGDEMDLTSSVLVPQPVETSNIRGSSQVRGDGDNEGTPTPTRANAILPPWMLRPTNE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00684 243 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cca03g00684 243 MobiDBLite consensus disorder prediction 198 227 - -
Cca03g00684 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 1 216 - -
Cca03g00684 243 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Cca03g00684 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 Coils Coil 150 187 - -
Cca03g00684 243 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g00684 243 MobiDBLite consensus disorder prediction 181 243 - -
Cca03g00684 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 Coils Coil 87 107 - -
Cca03g00684 243 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cca03g00684 243 Coils Coil 124 144 - -
Cca03g00684 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cca03g00684 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cca03g00684 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00684 Cca-Chr3 12518303 12530873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00684 1 202 MADS-box Gene Family AT1G26310 62.679 7.73e-89 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Cca03g00684 K-box 4.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00684 K09264 - gmx:100816836 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00684 03 12518303 12530873 Cca11g02043 11 45993038 45999716 ECH
Cca07g02282 07 51330477 51337703 Cca03g00684 03 12518303 12530873 ECH
Cca09g00339 09 7947251 7954547 Cca03g00684 03 12518303 12530873 ECH
Cca03g00684 03 12518303 12530873 Cca03g00684 03 12518303 12530873 ECH
Cca11g02044 11 46007708 46015437 Cca03g00684 03 12518303 12530873 PCT