Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00681 ATGGAGTCTTGGAGCTTTGTTGGTGAGGAGAAAGGGTATGTCTCCAATGGAGCACTCTCATCTCCCAACACACTTGGGAGAAGCAAAGGTTCCTTTTTGGGTTGGGAGCTGAAGACCCCATGTAGTTTTTCCAATGACATGTTGGCTTTGGGTCAGCAAAATGTTCAGGATCAAGGTTTTGAGGAGTTGGGTTTTCCAGGAATGTTGGGTAATAAGCAATTGTTTGGTGATCCTATTAGAAAGGTGGATGATGTTGTTGTTGACTGCAGAGTCACTAGTCCTAGTCCCGTTGTGGCTGCCCCAAATGCATTTTCTGCAAGGGGGGACTTCAATTCCAAGCTTTCAAACTCTCTTGGGGACTCTAATGGTGCCAATTCACTCATTGATTTGAAGCTGGGTAGGTTTGGTGACCATGGAGATGCCATGGTTCCAACATTTTCCAAGGGAGCCCCCACTTTGTCTTCATCTGAGTCCTCTACACCACAGAAAAGGGTGAGAGCTTCTGGGGTCCATTCTCAGACTGCTTATTGTCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAAACTTCCAAAGTTATAGTCAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGTTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAGCGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCTCAAGTTGGTATTCACTCTGGAAAAGCTGGGAGATTGCTTCAGCCTTATAGTGATAGCAGATTCCAGGAAACAATGCTAACATCATCCTTTATCTGCCAAGAAATACTCCCCAGTGGGGTCTTGTCTTCTGAGAAATATGGAGCAAGTAACTGGTGGAGACCTATAGAAGCTGAAGACACCAATGGTTTTACTTTTAAGCCACTTTCTTCCATTCCTATTACCAATGGACATCCTCAATCAAGATCTCTATTCCCTTCATACACCGAAAAACAAGTGCAATTTCTTAACAAAAACAACAACCAATATCATCATCCACCTTCCCTTGGTGGCCAAAATTCCGGGTCACAATTAGTATTCCATGACACTTGCTTAGGAAGTGAGGACTTGAATGTTTTTGATACAGAATTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCATAGGCACTACAGCATGAGTGAGGTTTCTGAAAAGATGATGGGAATAAGTTCACAGGATTCAAGTGGGGTGTCAGATAAGTTTCCATCTGCGGATGGAACTCCTCTTGATCTCAGTCATCCCATACTCATATCAGATAGTAATGAAATTGTCAATTTTGAAATGGCAGAAGGGATCTTCCAAGGTTGCACTGAAGATGGCCTCACCATTGACTTGCTTCAACTATCATCAAGAAATGTCACAATGCAACTGCATGGTGGCACCACTCCACCACTATCATCAAGAGATGATTATGATTAG 1527 0.4348 MESWSFVGEEKGYVSNGALSSPNTLGRSKGSFLGWELKTPCSFSNDMLALGQQNVQDQGFEELGFPGMLGNKQLFGDPIRKVDDVVVDCRVTSPSPVVAAPNAFSARGDFNSKLSNSLGDSNGANSLIDLKLGRFGDHGDAMVPTFSKGAPTLSSSESSTPQKRVRASGVHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRKRLAGHNERRRKPQVGIHSGKAGRLLQPYSDSRFQETMLTSSFICQEILPSGVLSSEKYGASNWWRPIEAEDTNGFTFKPLSSIPITNGHPQSRSLFPSYTEKQVQFLNKNNNQYHHPPSLGGQNSGSQLVFHDTCLGSEDLNVFDTELSGISDSGCALSLLSSQSQNSSSHRHYSMSEVSEKMMGISSQDSSGVSDKFPSADGTPLDLSHPILISDSNEIVNFEMAEGIFQGCTEDGLTIDLLQLSSRNVTMQLHGGTTPPLSSRDDYD 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00681 508 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Cca03g00681 508 MobiDBLite consensus disorder prediction 146 167 - -
Cca03g00681 508 SUPERFAMILY SBT domain 175 255 IPR036893 GO:0003677|GO:0005634
Cca03g00681 508 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 44 487 IPR044817 GO:0003677
Cca03g00681 508 Pfam SBP domain 177 250 IPR004333 GO:0003677
Cca03g00681 508 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
Cca03g00681 508 MobiDBLite consensus disorder prediction 148 167 - -
Cca03g00681 508 PANTHER 1 PROTEIN, PUTATIVE-RELATED 44 487 - -
Cca03g00681 508 MobiDBLite consensus disorder prediction 241 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00681 Cca-Chr3 12391052 12395236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00681 128 405 SBP-box Gene Family AT1G69170 41.367 1.06e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca03g00681 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00681 - - gmx:100777766 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00681 03 12391052 12395236 Cca11g02042 11 45927585 45932438 ECH
Cca03g00681 03 12391052 12395236 Cca03g00681 03 12391052 12395236 ECH