Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00680 ATGTCAGGATCAGAATTAAGTCCAATTCTGAAGGATGAGGTGGACATAGTGATCCCAACCATAAGAAACTTGGACTTCTTGGAGAAGTGGAGGACCTTCTTTGAAGGGTATCATCTCATAATTGTGCAGGACGGTGACCCTTCCAAAGTCATCAAGGTCCCACAAGGCTTCGACTACACTCTTTACAACCGCGAAGACATGAATCGAATTTTGGGTCCTAAAGTTCATTGCATTTCCTTCAAGGACTCTGCTTCCCGCTGCTTCGGCTTCATGATCTCCAAGAAGAAGTACATCTTCACCATTGATGACGACTGCTTTGTTGCGAAAGATCCATCTGGCAAAGACATTGATGCCTTGGAGCAACACCTTAAGAATCTTGTGACTCCATCAACCCCATTTTTTTTCAACACCCTATATGATCCATATAGAGAAGGTACAGATTTTGTGCGTGGGTACCCATTTAGTCTTCGTGAAGGTGTCCCTACAGCTGTTTCTCATGGCCTTTGGCTCAATGTTCCTGATTATGATGCCCCTACTCAGCTTGTCAAGCCCCTAGAGAGAAACACTAGGTATGTAGATGCAGTTATGACTATACCAAAGGGAACCCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGTGAATTAATTGGTCCAGCAATGTACTTTGGACTCATGGGTGATGGCCAACCTGTTGGACGCTATGATAATATGTGGGCTGGTTGGTGCATGAAGGTGATAAGTGATCATTTGGGATTAGGGGTGAAGACAGGTTTGCCTTACATCTGGCACAGTAAAGCTAGCAACCCATTTGTGAACCTTAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGTTGATCCCATTTTTCCAATCTGTTTCTCTTCCAAAGGAATGCACAACCGTTCAAAAATGCTACATTGAACTCTCCAAGCAAGTCAAGGCAAAGCTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCCATGGTCACATGGATTGAAGCTTGGGAGGACCTGAACCCATCATTTGGGACAAAATTTGAAGCATTGCCCAATGGGTCAGCAAAGTAA 1083 0.4395 MSGSELSPILKDEVDIVIPTIRNLDFLEKWRTFFEGYHLIIVQDGDPSKVIKVPQGFDYTLYNREDMNRILGPKVHCISFKDSASRCFGFMISKKKYIFTIDDDCFVAKDPSGKDIDALEQHLKNLVTPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNVPDYDAPTQLVKPLERNTRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGDGQPVGRYDNMWAGWCMKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSLPKECTTVQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWEDLNPSFGTKFEALPNGSAK 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00680 360 PIRSF UPTG 4 348 IPR004901 GO:0016866|GO:0071669
Cca03g00680 360 PANTHER UDP-ARABINOPYRANOSE MUTASE 3 4 353 - -
Cca03g00680 360 Pfam Reversibly glycosylated polypeptide 10 344 IPR037595 -
Cca03g00680 360 SUPERFAMILY Nucleotide-diphospho-sugar transferases 14 219 IPR029044 -
Cca03g00680 360 PANTHER UDP-ARABINOSE MUTASE 4 353 IPR037595 -
Cca03g00680 360 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 5 268 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00680 Cca-Chr3 12355918 12358570 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00680 K13379 - gmx:100816315 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00329 09 7717171 7720455 Cca03g00680 03 12355918 12358570 ECH
Cca03g00680 03 12355918 12358570 Cca03g00680 03 12355918 12358570 ECH