Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00679 ATGGAATTTGTTAGTGGTAAAGAGAAGCAAAAGGGTACATCTGGATACTTGAAATTGGTTGCCTTAATTGCTCTATGTCTCACTCTAATTTCTCCAGCTGAATCATTTGATCCATTGGATCCAACTGGGAACGTGACAATAAGATGGGATATCATGTCTTGGACATCAGATGGTTATTTGGCCACTGTGACATTATTTAACTTCCAACTATACCGAAATATTATGAATCCTGGGTGGACTTTGGGGTGGACATGGGCAAAGAAGGAAATAATATGGGCCATGATGGGAGCTCAAGCCACAGAACAAGGAAACTGTGCCAAGTTCAAGTTGAAGATTCCTCATAGCTGTAAGAGGAACCCTGAAGTGGTTGACTTGCTACCTGGAGCTCCTTTCAACATGCAGTTCAACAACTGCTGCAGGGGGGGTGTCCTTACTTCTTGGGGACAGAACCCTTCAGGGGCTGTCTCAGCATTTCAGATAGGTGTTGGACTCTCTGGCACCTCCAACAAGACAGTGAAATTGCCTAAGAACTTCAAGTTGCTGGGACCAGGACCAGGATACTCATGTGGCCCTGCCAAGATTGTTCCATCCACTGTCATCCTCACTGATGATCGCAGGCGAAAAATGCAGGCACTCATGTCCTGGAATGTGACATGCACATATTCACAGTTTCTTGCCACCAAGAACCCTAGCTGTTGTGTTTCTCTGTCATCTTTCTACAGTGACAAGGTCACAGGTTGCCCAGCTTGTGCATGTGGATGTCAGAATAACGATACCTGTGTCACGAGAGATTCAAAGATTCTGCACGAAAATGTGACCTCACCTCATCAAAAATCAGACATCACACCAAAACCATTGCTACAATGCACACACCACTTGTGTCATGTAAGGGTTCACTGGCATTTGAAAGACAACTATAAGGACTATTGGCGTGTGAAGATTGCCATCATCAACTTCAATTACCGGTTGAATTTCACCGATTGGTCTCTTGTAGTGCAGCATCCCAATCTCAATAATGTCACACAAGTCTATAGCTTTGAATATATGCCACTCCTTCCCTATGAATCCATAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTGCAGTCTGAGGTACTCATGAAGAAGGACAAGAATACATTTACTCTCAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTCAATGGTGATGAATGCATGTTGCCCCCTCCTGATTCATATCCTATGTTGCCAAATTCTGCCCATACACTACTATCAAAAAGAGATATGTTGATAGCAGCCTGTGTGATTTTTTCATTACTTTTTCATTTGGTTGTAACACTTTTTTGA 1374 0.4323 MEFVSGKEKQKGTSGYLKLVALIALCLTLISPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGNCAKFKLKIPHSCKRNPEVVDLLPGAPFNMQFNNCCRGGVLTSWGQNPSGAVSAFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKIVPSTVILTDDRRRKMQALMSWNVTCTYSQFLATKNPSCCVSLSSFYSDKVTGCPACACGCQNNDTCVTRDSKILHENVTSPHQKSDITPKPLLQCTHHLCHVRVHWHLKDNYKDYWRVKIAIINFNYRLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPYESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHTLLSKRDMLIAACVIFSLLFHLVVTLF 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00679 457 PANTHER COBRA-LIKE PROTEIN 1 457 - -
Cca03g00679 457 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Cca03g00679 457 PANTHER PROTEIN COBRA 1 457 IPR006918 GO:0010215|GO:0031225
Cca03g00679 457 PIRSF COBRA 13 455 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00679 Cca-Chr3 12350081 12352578 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00679 22 451 COBRA Gene Family AT3G02210 57.737 0.0 567
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00679 - - gmx:100813134 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00679 03 12350081 12352578 Cca03g00679 03 12350081 12352578 ECH