Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00678 ATGTACAACTTTCAACAATATCGCCATATTCAGGCCCCTGGATGGTCATTAGGGTGGACATGGGCTAAGAAAGAAGTGATTTGGAACATGATGGGAGGCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTTAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCAACAGTGGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCTTAAATTCATGGGGTCAGGACCCCAGCAATGCAGTAAGTTCTTTCCAGGTTAGTGTTGGTTCTGCTGGAACAACAAACAAAACTGTCAAAGTGCCTAAAAATTTTACTCTCAAAGCACCTGGACCTGGCTATACTTGTGGTCCTGCAAAGATTGTGAAGCCAACTACATTCATTACCAGTGACAAGAGGAGAATCACCCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGACACCAAGTTGTTGTGTTTCTCTCTCATCCTTCTACAATGACACGGTAGTAAACTGCCCAACCTGTACCTGTGGCTGCCAAAATAAAACAGAACCTGAAAGCTGTGTAGATCCAAATTCCCCACATTTATCTACAGTTGTATCTTCATCTGGAAAATCTACAAATACACCTCTACTCCAGTGTACCAGCCATATGTGTCCTGTTCGAGTGCATTGGCACGTGAAGCTCAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCACAATGGAACCTTGTTGTGCAGCATCCCAATTTAGATAATATAACCCAACTCTTCAGTTTTCAGTACAAGTCACTGACACCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGACCTTTCGGTAATGTTCAGTCAGAAATATTACTTAGGAAAGACAAATCAACCTTCACATTTGACAAAGGATGGGCCTTCCCAAGAAGGATTTATTTCAATGGAGATAATTGTGTTATGCCTCCTCCAGACGCCTACCCTTGGCTGCCAAATGCAAGTTCTAAACTAGTTCTCTCTTTACTAAGTACAGTCATAGCCACTTTAGCTTCTTTGTTAATCTTATTGAATCAATCATAG 1173 0.4186 MYNFQQYRHIQAPGWSLGWTWAKKEVIWNMMGGQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSNAVSSFQVSVGSAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVKPTTFITSDKRRITQAMMTWNITCTYSQFLAQKTPSCCVSLSSFYNDTVVNCPTCTCGCQNKTEPESCVDPNSPHLSTVVSSSGKSTNTPLLQCTSHMCPVRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNLDNITQLFSFQYKSLTPYEGLNDTSMLWGVKFYNDFLSSAGPFGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVLSLLSTVIATLASLLILLNQS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00678 390 Pfam COBRA-like protein 1 158 IPR006918 GO:0010215|GO:0031225
Cca03g00678 390 PANTHER COBRA-LIKE PROTEIN 1 387 - -
Cca03g00678 390 PANTHER PROTEIN COBRA 1 387 IPR006918 GO:0010215|GO:0031225
Cca03g00678 390 PIRSF COBRA 1 389 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00678 Cca-Chr3 12342726 12346933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00678 1 374 COBRA Gene Family AT5G60920 78.780 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00678 - - gmx:100815779 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00678 03 12342726 12346933 Cca03g00678 03 12342726 12346933 ECH
Cca11g02041 11 45920714 45924567 Cca03g00678 03 12342726 12346933 PCT