Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00671 ATGTATAATCAAGTGAATCGTGGTTCTCATTTCGGGCAGAGTTCTGTGCCTCAGGGGCTTCCACCACCGCCGCCTCCGCTGCCGTATCAGCAGGCTCCGCCGCATTTCCATCAATTCCCGCCACATAACATTGGTGGTcctcctccaccaccaccacctccagcagcagctaacattggtggtccaccaccaccaccaccaccaccTCATGTGTATTTGCATGGAcctcctcctccacctccacctactTCGTCAGTTCAAGGTTCACTTAATGTGATGCCAAATACCGGACAATCCTATGCTATCCCTTCTCAATTGCACCATGGGAATACCATGGCGCCACTCACATCTTGGCCTCCTGGGCCACCAACTAGAGTATTGCCGCCACCACCACGGCCACCTCCCTCGTCTTCCCAAGGACAAATTTTGTATAACCCTCCTTTCCATCCGCCTCCTCCACAGCCTGGTGATGTTCAGAATCTGCATAATGCTCCTCCACCGCCACCCCCTTCCATGTATTTCCATTCAACTGTTGGGAATTACCAAGTGCCTTCCATTGTTcccccaccactaccatcatctccaccaccaGTTTTGCCGGCTCCGCCACCTCCTATCCCTCCCATAACCTCTGCATCGTCAAATGATGCACGTGCTGATGACCCTAACTCTTTGAAGGTGCCTGGCTTGCAATTGAAGGCTGTGGATTCGGTTGACAGGGTTGTAGCTTCTCATCCATCTGGTGTTTTGCATGAATGTGGTTCTGATTCTAATTTGGATGGTGCAAGTGTTAGAGAGGTTGCAGGTGCTGACAGAGATGAGGATCTTCCCCCGCCCAAGCCAACAGAAGAGAAAACTTTGCAGAAGATGGAAGCTTTGTGTCAGCGTATTGCTGAGACAGGTGCTGAAATTGAAGATAAGATTCGTCAAGATGAATTTCAGAATCCTGAATATGCATTTTTGTTTGGTGGAGACCCGGGAACTGAAGCAGCAGTTTCTCACACTTATTTCCTTTGGATGAAAAAGAAATATAATTTGGATACTGGATGGCATGAAAAGAAAGGGAAATCTGAGACTGAATACTCATCAGGGAAACAGTATCATCTGCATGTTGCAACTGTAAATACCGATTCTGACATGGAAATGGAAGATGATATCACCCTTTCTGAAAAGGACCAAGGTTCAAATTATGCAACTGAGGCCCCAACTCAGCAACATAATCAGGATGATGACGTGTTTAGCGTGAATCAGAATATACAGCAGCTGCATAATTTAACAGAAAATGACCCTGCCAAGGACATCTCATCCTGCAGTGCTTCATACTTTGGATCCACTGGAGTCAGCAAAAAAAATGAAGGACCAGAGATTTTATCTGATTCAGAGCACATGAAATCTACAATACCAGTTACCAAGGGTGGTAGTCCTGTAAATGACTCCACTAAAGTTGCCGAATTACCCCTGGGCACAGCTTTGGAGAGATCTGCAGCTCTTGTAGAGAATGATTTCACACACACTAGTACTTCTGATCACAATGAAACCACTATTCCCGATAGAGATCATGGGCTACTCATAAGGAGTGGCAGCCCAATACGACTTCTTCAAGATTATGCTTCTGATGACACTTCAGATAATGAAAATGAAGGCAATGCTGCAGATGTTAATGTTTTCACGGTTTCAGGAGGTGCTGACACTGGTGCTTCAGCTGCCCATATAGATTCTGGGAGTTATATGGAGACTGATATCAGATCTAAGATTTCATCCAGTGCCCAAAAGGGATTAGGGCCACTCTCCAGAACATCACGGGATGATTCAGAAATATCTCCACATTTATTACAAGAGTCTAAGGAAACCCGTAAGAAATCTGTCTCACGTTGGACTAGTGATGGATGCATTGAGCATAACCTTGAAAATCAGGTGTCTGTTAATTTTGCTGCTTCGATAGAAGCTTTCAAAAGCAAAGATGCATTAGAGGGTGCTGGCATTGACTGTGGTAGTAAAAGTGTTAATGCTGGAAAGCAAGATGAGGGAAAAACCTCAAAAGTTGAACCAAATGTTCTGAAAGTAGATGAATTTGGAAGACATCTCCGAGAAGGTCTTACAGATAGTGATTCTGATGATTCACGCTATCAGCGCACAAGGAGAATAAAGAAAAGAGATAGAAGCCGGAGTCACAGCCGGTCTCCTGACCggaggagtaggaggaataggaggagTCCCCGGAGGAGAAAGGATAAAAGAAACAGGTCCCGCAGCTGGTCCCCTAGGCACCGAAGGAGCAGGAGTAGGTCTCCAATCTTAAGACGTTCAGGTGACTTTCGTGGTGAGAATGTGAAAAGGAACAAGGATCAGTGCTTGGACTTCCTTCGAGGAAAGTGCTATCGAGGAGCTTCTTGCAAGTACAGTCACCATGAATCTGACATGAATGCTACTTCAAGGCGGTATCATAGGAATAAACATGATCTGGAAGTCAATTCTCATGCAAAAGCATCTAAGATTAATGGAGATACAAAGAATATTTCTTCTGAAGTGTTGGATAATGAGCGTGATGGAGTCAAAAGTCAGGATGGGGATATTTGTCAGAATGTAACTATCCAGGAAGTAGTACAGAAAAAAGAAGATTCAGGGAGGCATGCTGTTGCGTCAACTACCATACATATCGATGATCAATCAGTTAATAGCAATCTAATTAAATCTGAATGTATCAGAGAGGTTGCTCCTGAAATGCAGGAAACTTCAATCCATGAAAATGATAGCTTTCAGAAAGCAGGGGTTTCTCATCAGCAACACTTGGTTGACAGCTTTCACCCTGAAGCTTTAGACAGTGGTGATACTTCTAAACAATCTAGTGCATATCCAGATGTCATTCCATCAGAAGATGGCCCATTTGTTCAGCAAATGCGACTCAATGTTTCAGCTGTTGGAATTCCGGAACATTCTGGTTACCCATCTCAGCATGTAAATGTATCCTTTGTGACTGGTTCGTTGCCTGATAAAAGATCAACTGTTTCTGCTAGTGCTAATGAAGTTCCTGGTAGTGAACCTCTACCACACATGTTACCATCAACTCAGCTACAGTCAGCCACTAATTCTGTTGGTCAATGTGTCACATCAGAGCAAACTTCATTGCACTCTCAGGCTTCTAGAGAATTACCTCCACTGAGTGGTTCTATAGTGGAATTACCACTTCATTCTTACCAGTTGCCTGCTTCTGTTGTCTCAAATTCACAGGGTGATGCTGTGCATATGACACAAATTTCGAGGCAGTGTGGTGTGATGCAACAAAGTGCATTCTTTCCTTTCCAATCCACTACCAGAGAAAAGTTTGAACCTTACCCAGCTCCATTACATACACAGAATGCTCACTTCAATGTACCACCTAATAGCTCTAGGACATCCTTGccactaccaccgccaccaccaccaccaccaccatcaAGAGCGGTGCATAATTCCAGTTTAAACTCAGGAGTTGCAAAATCATATATTTCTTCCGAATTCAATCAGAGTCAATTGCATTCGAGGGCTGACTTTGTTTCTCAGAATTCTGAGTTTAAGGATCAAGCATACCCTCCAATGCAGGACCATTCACGATCATTCATGCTTACAGAACCTTTCTCTCCAAAGCATCTCCCTCAAGGGAACCCAGCTAGTCAATTACTTTCAGGCTCTAATCTCAACAGAGAAGACTTTCATAATCAACTTTCGATGCCGGACTCAAAATTTTCATGTAATACATCATTTGGCAGCCTGCAGCCTCAACCAAATCAATTTTCCTGGAAGTTGGATGTGAACAGACTGCAACCTCCTCTGGGTGACAAGTTGCCTCCTGAAGGACATTTTCTGACATCTTCCCACGTTGATTCATTATCACAGAAGCAACAATCAATGTATAATTTCCAATGTTCTGTATCTGAGGCTAATTTGGGTGCGCCTGGGGAGACTGCTACTGTTTCCAGATTTCCACCTGATTTTCTGGATAACAATCATTCAATTTCTATTCCATCTTTTGGGGGATCAAGAATATCTGCTCACTATAATCCTTATGCATCAACCTTTGAGAAACCACTTAGTTCCAAATTCAGTTCAAGTATTTTTAGACAGGAAAATGAAGTTATCCCTGGTAACAATTATGCTTCTTCTAGATTGAACCATACTCCTGTAAATGGGGAAGGTGATGGTGGGGTTGGGTCAAGACAGTCAGCATCCTCATCAAAATCAGCTAGAGCCCTTGGTCAGATGTTACCTAGGTCTGGTGGTGACCAATATGACCCACTTTTTGATAGCATTGAACCATCATCCTCTCTGAAAAAAAATGATTTTGATCAGAAGCAGGAAGTTACAGGTGAATCCAACATCAGTCTAAGGCCCAAAAGTTCTTACATGTCTCTGGATGCAGATGATAACAAGCATGAGGAGGTTGGGGCTGTTGCCTCTACCACTTCTCAGAATAATGATGAATATGGTGAGACAGCAGGTGCAGAAGATTGTGCTGATGAAAATGAGAGTGTAAGCGATCAAGTGGATGCTGCAAAAATGACTACAGGGGATGTTGAGATTAATCAGGTCAAGTCTCCAGGGAAAAGAAAAAAGAGTAAGGATTCCAGATCGATGAAATTGTTCAAAGTTTCCATTGCGAACTTTGTAAAGGAGGTTTTGAAACCATCATGGCGGCAAGGTAATATGAGCAAGGTGGCTTTCAAAACCATTGTAAAGAAGACTGTGGATAAAGTGTCAGGAGCCATGAAAGGCCATCGTGTACCCAAGTCCCAAGCAAAGATAAGTCAATATATTGATTCATCACAGCGAAAGTTGACTAAACTTGTGATGGGTTATGTTGACAAGTATGTCAAGGTATGA 4857 0.4142 MYNQVNRGSHFGQSSVPQGLPPPPPPLPYQQAPPHFHQFPPHNIGGPPPPPPPPAAANIGGPPPPPPPPHVYLHGPPPPPPPTSSVQGSLNVMPNTGQSYAIPSQLHHGNTMAPLTSWPPGPPTRVLPPPPRPPPSSSQGQILYNPPFHPPPPQPGDVQNLHNAPPPPPPSMYFHSTVGNYQVPSIVPPPLPSSPPPVLPAPPPPIPPITSASSNDARADDPNSLKVPGLQLKAVDSVDRVVASHPSGVLHECGSDSNLDGASVREVAGADRDEDLPPPKPTEEKTLQKMEALCQRIAETGAEIEDKIRQDEFQNPEYAFLFGGDPGTEAAVSHTYFLWMKKKYNLDTGWHEKKGKSETEYSSGKQYHLHVATVNTDSDMEMEDDITLSEKDQGSNYATEAPTQQHNQDDDVFSVNQNIQQLHNLTENDPAKDISSCSASYFGSTGVSKKNEGPEILSDSEHMKSTIPVTKGGSPVNDSTKVAELPLGTALERSAALVENDFTHTSTSDHNETTIPDRDHGLLIRSGSPIRLLQDYASDDTSDNENEGNAADVNVFTVSGGADTGASAAHIDSGSYMETDIRSKISSSAQKGLGPLSRTSRDDSEISPHLLQESKETRKKSVSRWTSDGCIEHNLENQVSVNFAASIEAFKSKDALEGAGIDCGSKSVNAGKQDEGKTSKVEPNVLKVDEFGRHLREGLTDSDSDDSRYQRTRRIKKRDRSRSHSRSPDRRSRRNRRSPRRRKDKRNRSRSWSPRHRRSRSRSPILRRSGDFRGENVKRNKDQCLDFLRGKCYRGASCKYSHHESDMNATSRRYHRNKHDLEVNSHAKASKINGDTKNISSEVLDNERDGVKSQDGDICQNVTIQEVVQKKEDSGRHAVASTTIHIDDQSVNSNLIKSECIREVAPEMQETSIHENDSFQKAGVSHQQHLVDSFHPEALDSGDTSKQSSAYPDVIPSEDGPFVQQMRLNVSAVGIPEHSGYPSQHVNVSFVTGSLPDKRSTVSASANEVPGSEPLPHMLPSTQLQSATNSVGQCVTSEQTSLHSQASRELPPLSGSIVELPLHSYQLPASVVSNSQGDAVHMTQISRQCGVMQQSAFFPFQSTTREKFEPYPAPLHTQNAHFNVPPNSSRTSLPLPPPPPPPPPSRAVHNSSLNSGVAKSYISSEFNQSQLHSRADFVSQNSEFKDQAYPPMQDHSRSFMLTEPFSPKHLPQGNPASQLLSGSNLNREDFHNQLSMPDSKFSCNTSFGSLQPQPNQFSWKLDVNRLQPPLGDKLPPEGHFLTSSHVDSLSQKQQSMYNFQCSVSEANLGAPGETATVSRFPPDFLDNNHSISIPSFGGSRISAHYNPYASTFEKPLSSKFSSSIFRQENEVIPGNNYASSRLNHTPVNGEGDGGVGSRQSASSSKSARALGQMLPRSGGDQYDPLFDSIEPSSSLKKNDFDQKQEVTGESNISLRPKSSYMSLDADDNKHEEVGAVASTTSQNNDEYGETAGAEDCADENESVSDQVDAAKMTTGDVEINQVKSPGKRKKSKDSRSMKLFKVSIANFVKEVLKPSWRQGNMSKVAFKTIVKKTVDKVSGAMKGHRVPKSQAKISQYIDSSQRKLTKLVMGYVDKYVKV 1618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00671 1618 MobiDBLite consensus disorder prediction 463 477 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 503 522 - -
Cca03g00671 1618 Gene3D - 777 846 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 443 479 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 697 712 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 116 137 - -
Cca03g00671 1618 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 1618 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 247 286 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1112 1152 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 185 210 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 86 112 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 266 286 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1130 1147 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 587 621 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 587 601 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 697 774 - -
Cca03g00671 1618 ProSiteProfiles Zinc finger C3H1-type profile. 778 805 IPR000571 GO:0046872
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1 227 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 17 85 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g00671 1618 Gene3D Surp module 262 347 IPR035967 GO:0003723|GO:0006396
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1375 1462 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 666 685 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1395 1410 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 602 621 - -
Cca03g00671 1618 PANTHER EXPRESSED PROTEIN 1 1618 - -
Cca03g00671 1618 SUPERFAMILY Surp module (SWAP domain) 277 344 IPR035967 GO:0003723|GO:0006396
Cca03g00671 1618 MobiDBLite consensus disorder prediction 145 173 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 1477 1503 - -
Cca03g00671 1618 MobiDBLite consensus disorder prediction 713 763 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00671 Cca-Chr3 12254397 12264745 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca03g00671 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00671 - - gmx:102668322 2173.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00671 03 12254397 12264745 Cca03g00671 03 12254397 12264745 ECH