Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00669 ATGAGACAGGTGACAGAATTAAAGCTAGAGTGGTTGGTGGAAATTGCCCCCCACTATTACCAGCTTAAGGATGTTGAAGACTGTCCTTTCAAGATTAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGCCACATCAACCAAAGTAGATGTTTCTGCTGTTAATGTTGACAACTTTGATGACAAATACTTTACTAAGGAAGCCCAAAAGAAAAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGATAAGGAGGAAAAGAGTGTATTGCCCCAGCAGAAGAAAGATGATCAGAAAACTGTGGACTCTACATTGATTAAAGCCATTGAGAGTGTTCCAGACTTGAAGGTTTATCTCGGTGCTAGGTTTTCTCTAAAGGATGGTGTGAAACCTCATGAACTAGTCTTCTAG 420 0.4048 MRQVTELKLEWLVEIAPHYYQLKDVEDCPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDNFDDKYFTKEAQKKKKKGEGEFFEADKEEKSVLPQQKKDDQKTVDSTLIKAIESVPDLKVYLGARFSLKDGVKPHELVF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00669 139 CDD KOW_RPL6 29 139 IPR041997 -
Cca03g00669 139 PANTHER 60S RIBOSOMAL PROTEIN L6 28 139 - -
Cca03g00669 139 PANTHER 60S RIBOSOMAL PROTEIN L6 28 139 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca03g00669 139 SUPERFAMILY Translation proteins SH3-like domain 27 79 IPR008991 -
Cca03g00669 139 ProSitePatterns Ribosomal protein L6e signature. 33 51 IPR000915 GO:0003735|GO:0005840|GO:0006412
Cca03g00669 139 Pfam Ribosomal protein L6e 32 139 IPR000915 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00669 Cca-Chr3 12221081 12222655 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00669 29 139 Cytoplasmic Ribosomal Protein Gene Family AT1G74060 78.378 4.92e-45 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00669 K02934 - gmx:100499766 193.356