Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00665 ATGTCAAGTTCAAGAGAAGATTCTCAAGCCAAGCAAGAGGGTGACACCAATAGTATCAAGTTCTCCAAAGCATCATCTACCACTTCAAGACAATGGTCAGCGTTCAGAAATCCAAGAATTGTGAGAGTGTCACGTTCTTTTGGAGGAAAAGATAGGCATAGCAAGGTTTGCACCATAAGAGGGTTGAGGGACAGAAGGATTAGGCTCTCAGTCCCCACAGCAATTCAGCTATATGATCTTCAAGACAAGCTTGGGCTAAGCCAACCTAGCAAAGTGATAGATTGGTTGCTTGAAGCCACCAAATTCGACATTGACAAACTCCCTCCACTTCAATTCCCTCAGGGTTTTGCTCAATTTCATCATCCACAAACCCTACTTCCCTTTCATGGATCAAGTGCTGCATCTCAACTTTCACTTGGACCCTTATGTGATGCTAGCTCCACATTAGTAAGGGATGGGGGAATTCAAAACCTCATGGCAAAATCAAGGTATTGGGAAAATATGGATTCAATATCAAGGTTGAAAGGCAAGGAAGCTGAAAAGGGCAAGTGGATCAAAACAAATGAGCAAGAGAATCAAGATGGTTACAATGACTTGCAAGTTTCTACTCAGAGGCTTTTTCCAATGGGTAGTAGTGCTACCACTACTCACTCTCTTTTACCTGGTTTGTTAAACAACACTATGTCATATAACTCCTACAATTCTGAGCCTTCTAGTTTGTCTTTATCCCAATTTGGAAGCCATGGATTTTTCCCTTCTCAGCAGGTAGATCCAAATAATCCAAGCAATGGTAATGGTGTGCAATTCCCATCTTCTTTGCCATTGCCACCATCTGGTTCTCAATTTTTGTTTGGTTCATCTTCTGCTACACCGTCAATTTTCACTACCTATGCTTCGTTTACAACACCTTCAGTAGACAATGATCCTAGACAGTTCAACCACATTCAGTTCTTGAACTCAGGTTCTCAACTCTTGCCTCATCATCCTCTCATTCCATCTCTTCACTCGTTCAATTCACCTGTCAGACCCTTCCCAGCAACACCCTTTAGTTCAAAGCTTTTGGCTTCAGATAGCAACAACGACAACAGTCGTAGCCAACAAGACAAGGGCTTTCAACCAAGTTTTTCTTTGGTGTTAATTGGAGGGACGGAGAAGAAAATGAGATATGAAGACAGGTGA 1179 0.4215 MSSSREDSQAKQEGDTNSIKFSKASSTTSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLQFPQGFAQFHHPQTLLPFHGSSAASQLSLGPLCDASSTLVRDGGIQNLMAKSRYWENMDSISRLKGKEAEKGKWIKTNEQENQDGYNDLQVSTQRLFPMGSSATTTHSLLPGLLNNTMSYNSYNSEPSSLSLSQFGSHGFFPSQQVDPNNPSNGNGVQFPSSLPLPPSGSQFLFGSSSATPSIFTTYASFTTPSVDNDPRQFNHIQFLNSGSQLLPHHPLIPSLHSFNSPVRPFPATPFSSKLLASDSNNDNSRSQQDKGFQPSFSLVLIGGTEKKMRYEDR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00665 392 Pfam TCP family transcription factor 49 157 IPR017887 -
Cca03g00665 392 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g00665 392 MobiDBLite consensus disorder prediction 352 376 - -
Cca03g00665 392 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 368 IPR005333 GO:0003700
Cca03g00665 392 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
Cca03g00665 392 MobiDBLite consensus disorder prediction 352 373 - -
Cca03g00665 392 PANTHER TRANSCRIPTION FACTOR TCP17 2 368 - -
Cca03g00665 392 MobiDBLite consensus disorder prediction 250 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00665 Cca-Chr3 12094189 12095968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00665 5 368 TCP Transcription Factor Family AT5G60970 39.119 5.30e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Cca03g00665 TCP 8.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00665 - - gmx:100788984 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02030 11 45755233 45757256 Cca03g00665 03 12094189 12095968 PCT