Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00655 ATGGCCATGGCTGCTGCTCTGCGACGCGAAGGGAGGCGTTTGGCGCAACCCATCAACGCCCTCCAATCCCATTCCTCTCTCATCTCTCAAGACCAAGCTCCTCATGGGGCTCGCTCCATTTCCACTCAAATTGTGAGGAACCGAATGAAGAGTGTGAAGAATATCCAGAAAATCACCAAGGCCATGAAGATGGTTGCCGCATCCAAGCTGCGTGCTGTTCAAACCAGAGCTGAAAATTCCCGTGGCCTCTGGCAACCCTTCACGGCTCTTCTCGGTGACAATCCCAGTGCTGATGTTAAGAAGAACGTTGTTGTTACCATTTCTTCGGACAAAGGTCTTTGTGGTGGAATCAATTCCACGTCTGTCAAGATAAGCAGGATTCTGCACAAATTGAATTCTGGGCCTGATAAAGAGACAAAGTATGTTCTATTGGGAGAGAAGGCTAAAGTTCAATTGGTACGTGACTCCAAGAAAGACATTGAGCTCACCCTAACTGAATTGCAGAAAAACCCCCTGAATTATACTCAGGTGTCTGTCTTGGCAGATGACATTCTAAAGAATGTGGAGTATGATGCATTGAGGATTGTTTTCAACAAATTTCATTCTGTTGTATCATTTTTGCCAACAGTGTCAACAATACTATCTCCCGAGGTTATTGAGAAAGAGGCTGAAGCCGGAGGAAAGCTTGGGGAACTGGATTCTTATGAGATTGAAGGTGGTGAGACAAAATCAGAAATTCTTCAGAATCTGGCCGATTTTCAGTTTTCTTGTGTCATGTACAATGCGGTGTTGGAGAATGCTTGCAGTGAGCAAGGAGCAAGAATGTCTGCCATGGACAGCTCTAGCAGGAACGCTGGGGATATGCTTGATCGTCTCACCCTAACCTATAACAGAACTCGTCAAGCATCAATCACCACTGAATTGATTGAGATTATATCTGGAGCTTCAGCACTGACTGGTTAA 963 0.4548 MAMAAALRREGRRLAQPINALQSHSSLISQDQAPHGARSISTQIVRNRMKSVKNIQKITKAMKMVAASKLRAVQTRAENSRGLWQPFTALLGDNPSADVKKNVVVTISSDKGLCGGINSTSVKISRILHKLNSGPDKETKYVLLGEKAKVQLVRDSKKDIELTLTELQKNPLNYTQVSVLADDILKNVEYDALRIVFNKFHSVVSFLPTVSTILSPEVIEKEAEAGGKLGELDSYEIEGGETKSEILQNLADFQFSCVMYNAVLENACSEQGARMSAMDSSSRNAGDMLDRLTLTYNRTRQASITTELIEIISGASALTG 320
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00655 320 PIRSF ATP_synthase_gamma 7 318 - -
Cca03g00655 320 Pfam ATP synthase 43 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 PANTHER ATP SYNTHASE GAMMA CHAIN 1 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 43 318 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 Hamap ATP synthase gamma chain [atpG]. 39 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 PANTHER BNAA05G10580D PROTEIN 1 318 - -
Cca03g00655 320 Gene3D ATP synthase, gamma subunit, helix hairpin domain 45 315 - -
Cca03g00655 320 PRINTS ATP synthase gamma subunit signature 99 118 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 PRINTS ATP synthase gamma subunit signature 191 208 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 PRINTS ATP synthase gamma subunit signature 265 284 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 PRINTS ATP synthase gamma subunit signature 296 317 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 CDD F1-ATPase_gamma 41 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 41 318 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cca03g00655 320 ProSitePatterns ATP synthase gamma subunit signature. 304 317 IPR023632 -
Cca03g00655 320 Gene3D - 65 277 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Cca03g00655 Cca-Chr3 11734739 11741195 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00655 45 318 Primary Pumps ATPases AT1G15700 30.462 4.05e-28 110
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00655 K02136 - gmx:100813657 556.599
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00655 03 11734739 11741195 Cca03g00655 03 11734739 11741195 ECH