Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00633 ATGGAAGAAGATCAAGAAGTGAAGCACGTGTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGAAGATCCTTGGGGGGGCACATGAGGTCGCATGTCACCAATGTTTCAACCGAGGCAGAGAAAGCTTCTTCTTTCAACAATGGTGGAGGAGACATGGGGACAGGCTCTGAAGGGGGTGGTAACAATggaggaggaggaggaggaggGTATGGTTTGAGAGAGAATCCGAAGAAGACTTGGAGGTTCACAGATTCGAGTGAGGACACTTTGGTGGTGTTGGACAAGCTGTGCAAGGAGTGTGGCAAAGGGTTTCACTCTTGGAAAGCTCTGTTTGGTCACATGAAGTGCCACTCAGAGAGAGTGTCACATAACAATAGCAGCTTGTTGGAGGATCAAGATTCGTGGAACGATAATCATAACACCAATGCTGAACATGAACACAAGGTGGTGTTGGACAGCCACTCTGACAATGAAGCCACTGCTCCAAACCGAAGGAGAAGATCCAAGAGGAGAAGGACAAGGTACTTGGCTCCATCAACTTCTTCTGTGTCCCTCGTTTCTGATGCTGAGCAGGAGCAGGAAGAGGTTGCCATGAGTTTGATGATGCTTAGTAGGGATGTGACTCCTTGGTGTGGTCTCAATTCTGGTAACTCATTGCATTTTGAATCTCTTTCTAAGACTGAGGGCAAGAGGGTTGTCTCATATGTGTCTGAGATGCCAAAAAAAGTTACTAAAACAAGGGAGTTTGGGAATTTTGATGGTTCAAATCTCAACTCCAAAGGGAAAACAAGTTCAGAGCTTTTGGGTACTACTGAGAGTCTTGGAAGTGGATTTGGGGTCAACAAGAATTTTCATGGGAAGGATAAGAAGGCTGAGCTTGATTCTAGTTCTGCATTTGAGGACAATGGAACAGAAGATAATGGTAATAGTAAGTACACTTCAATCAAGGCAAAGTTTTTGGATTCTGAATTGAAGTCAACTTCTCTGAGGAGTTGGGTGAACAAGCCTTCAGAAGGTGAGCTGAGCAAAAGCAACAACAAGAGAGGAAAGTTTGAGTGTACTACTTGCAAGAAAATCTTCCACTCATACCAAGCACTTGGAGGCCACAGGGCTAGTCACAAGAAGATCAAGGGTTGCTTTGCTTCAAGAAATGAGAGCAGTGAGAACAGCACTGAGTTGGAAGAACACCTCTCCCCTGACCCAACAACAACAGAAAGTAAGCTCCTAAAGAATGAATATGTGGAAAAACATGAAATGGTTACTAATACTATTGCTAATGGTTTTGATAATGAGGCAGACACAGTGAGAGAGTCCAAGAAGGTTAAAGGGCATGAGTGTCCAATTTGCCTCAAGGTTTTCCCTTCTGGCCAAGCCTTGGGTGGTCACAAGAGATCTCATCATTTGGCTGGTGGGTCTGAGAGTGCTAGAAACTTTCAAAGTCAAACAGTTACACTTGAGGAAGCAGCACCAGAAATTAGGGACTTTTTTGATCTTAATCTTCCTGCTTCTACAGAGGAAGAAGGTACTAGCCATGGCCATGGCCATGCTGAGTCTTACAGACCTTGGTGGTTAGTAGGAAGCAGCCACAAGCAGGAGGCACTGGTAGGCCTTATTTCTAACTAA 1623 0.4424 MEEDQEVKHVCKFCSKSFPCGRSLGGHMRSHVTNVSTEAEKASSFNNGGGDMGTGSEGGGNNGGGGGGGYGLRENPKKTWRFTDSSEDTLVVLDKLCKECGKGFHSWKALFGHMKCHSERVSHNNSSLLEDQDSWNDNHNTNAEHEHKVVLDSHSDNEATAPNRRRRSKRRRTRYLAPSTSSVSLVSDAEQEQEEVAMSLMMLSRDVTPWCGLNSGNSLHFESLSKTEGKRVVSYVSEMPKKVTKTREFGNFDGSNLNSKGKTSSELLGTTESLGSGFGVNKNFHGKDKKAELDSSSAFEDNGTEDNGNSKYTSIKAKFLDSELKSTSLRSWVNKPSEGELSKSNNKRGKFECTTCKKIFHSYQALGGHRASHKKIKGCFASRNESSENSTELEEHLSPDPTTTESKLLKNEYVEKHEMVTNTIANGFDNEADTVRESKKVKGHECPICLKVFPSGQALGGHKRSHHLAGGSESARNFQSQTVTLEEAAPEIRDFFDLNLPASTEEEGTSHGHGHAESYRPWWLVGSSHKQEALVGLISN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00633 540 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Cca03g00633 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 351 378 IPR013087 -
Cca03g00633 540 SMART c2h2final6 351 373 IPR013087 -
Cca03g00633 540 SMART c2h2final6 444 466 IPR013087 -
Cca03g00633 540 SMART c2h2final6 9 31 IPR013087 -
Cca03g00633 540 SMART c2h2final6 95 117 IPR013087 -
Cca03g00633 540 MobiDBLite consensus disorder prediction 383 405 - -
Cca03g00633 540 ProSitePatterns Zinc finger C2H2 type domain signature. 353 373 IPR013087 -
Cca03g00633 540 Gene3D Classic Zinc Finger 1 121 - -
Cca03g00633 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Cca03g00633 540 MobiDBLite consensus disorder prediction 39 73 - -
Cca03g00633 540 Pfam C2H2-type zinc finger 9 31 - -
Cca03g00633 540 Pfam C2H2-type zinc finger 97 118 - -
Cca03g00633 540 Pfam C2H2-type zinc finger 444 467 - -
Cca03g00633 540 Pfam C2H2-type zinc finger 351 375 - -
Cca03g00633 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 444 466 IPR013087 -
Cca03g00633 540 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 540 - -
Cca03g00633 540 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 540 - -
Cca03g00633 540 Gene3D Classic Zinc Finger 348 466 - -
Cca03g00633 540 SUPERFAMILY beta-beta-alpha zinc fingers 351 466 IPR036236 -
Cca03g00633 540 MobiDBLite consensus disorder prediction 148 163 - -
Cca03g00633 540 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Cca03g00633 540 MobiDBLite consensus disorder prediction 148 188 - -
Cca03g00633 540 SUPERFAMILY beta-beta-alpha zinc fingers 9 117 IPR036236 -
Cca03g00633 540 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00633 Cca-Chr3 11153828 11155595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00633 1 506 C2H2 Transcription Factor Family AT1G26610 33.764 3.52e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g00633 zf-C2H2_6 1.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00633 - - gmx:102660800 773.852