Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00628 GTGCTCATAGACCGTACGACATATATAACCAGATAAATATGTTATGGCCTGGTTTGCTGGGAAAGACTAAATACGAATTTGCAAAAACTTATTGCGATTTGAAATATATGAAAGGCATCCAAGGAAAATATTTTGCGGATTATTCAAAGGGTGTGCGCTTGGAAGAGTTAAACGTGCTATTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAACATGTGTTGCTACAGTTACCTCCAAAACGTCGGCAAATTATAAGATTGTTGTTAAAGAGATCGGATATAGTTGCTGCAAAAACTGCAGTTGGGGTATTGAATATTGATGCCTCTGAAAGGGCAAGTGAAGACATGTCTTTGGAAAATTTGGATGAACCTGATGGAAAGCTTTCTTATCAGGAACTTGGAATTGCAAAGCTTTCTGGTTTTCGTGAATGGCTTGCCCTCCATCCAATCATTGAAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGGACAAGTTTTGTGCGAATTGATGGAAATACTCTTGCCAGAGACAGGCAATCAGCAGTAGTTTCATTTCGGTCATCACCAGAGGTTAAAATTGCGATAATAGGCATTCTAGCAGCTGGATTTGGACTTGATTTCTCAACTGCGCAAGATGTTGTGTTCTTGGAGCTACCACAGTGCCCAACTCTCATGCTCCAGGCCGAGGATAGAGCTCATCGTCGGGGACAAACAAATGCAGTTAATGTATACATATTCTGTGCGAAGGATACCTTGGATGAATCACACTGGAAAAACTTGAACAAAAGTTTGCAACGTGTTTCATGTACAACTGATGGAAAATATGATGCGAAGAAAGAGATAGAGGTTGAAGGTATTTCTTATTTAGACTCATCTTTGAAAATTGATAATTGTGAAGAGCAATCCTCTTGCAAAGATGCATTAGGTGAAACACAATTGGCTACGCAACCTTCTGAAGTAAATCCAAATGAATCAGAAGCAAATCAAAATGATAAAACTGATGAGGGGACTTGTGTTAATAACTCAACTCAGAGTTCTAATATTATGGTTGATAATGTCTCCTGCCAAGATTTAGGCAAGGCTTCAGGTCTGGATGGAACTTGTGGTGTTGATGTTTTTGATGCTGTGGAGGGCTTTCAGAAGTGTTTTGAGGACAAAGAACAATTGAAGGATATGAAATCAGTTTCAACAACAGAAGCAGATGACGACCAGTCTGTTCATCCAGTTGAAACCGATGGACATTGTTCTAATCAAGTTGATTTTCTGCGATTTGAGGTGAGCCCATACACCGGAAGGATCCACTTGTATACTTGCATTTTGGGTACTGATGAAAGACCACAACCACTTCATGAAAATTTTCGACCAGAGGAACTTGAGTTATTAAGTTCTGTTGCTGATGATGAGAAACAGGCACATGATGAGAATCAGAAAATAGAGTCTGTATCTGTCAAGGAAAATCCTGCTTATAGGTCGACTCTTCTGGCTTTTGCGGAGGAGTGGAAGAATTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCATTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAGGGTTTATTAAATGGTGGAAGTAGAAGACGCAAGACACCCTTAATGGAGATTAGCTGTCCTTTACCATCAGATGCTGTTTGGAGAAAGGTTTATCTTCGAAATGGCATCAGTAAAAAGGAAAAAGAATACACTCAAGGCTGGAGTCTGACCGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAGTGCTTGGAAAACAATGCTAGGACACCTGAATATTTTGAAGATCTTTTTTGTAGCCTTGTCTGCTACGAGGAGTATCGAATGAGAACTAGCAACAGATATCTTCGTGAGGAACTTTTCAAAATTGAACATGGTGTATGCACAAATTGCCAATTGGACTGTCATAAGCTTGTTGAGTATATAAGACCTTTGTCATTGGAAAGGCGGCGAGAGTACATAGAGAAAGTAGCACCCAATGTTGCTAAACGAAAGAGCATGCTTGAGAAGCTTCTCAATGAACCAACAGAGGGCAACGCGTGGCATGCTGACCATATTGTTCCAGTATATCAAGGAGGAGGTGAATGCAAACTGGAGAATTTGAGGACTCTCTGTGTGGCTTGCCATTATGATGTTACTGCAGCACAATGTGCTGAACGGCGCATAGCAAGAGCAAAGGCCAGGAAACAACTAAAAGCGTTAATGAATAGCATGAAAAATGATATTAAGAGTGCTGCTAGCTCTAAAATTAAGGACTGTAGGCGTCTCGAGGACAAAGAAGGGAATATGCCTGAGGATGAGCTTTTAGTCGAGGTTCCTGGCAGTGCCTATTCTTTAGCAGACAGCTAA 2450 0.4037 AHRPYDIYNQINMLWPGLLGKTKYEFAKTYCDLKYMKGIQGKYFADYSKGVRLEELNVLLKQTVMIRRLKEHVLLQLPPKRRQIIRLLLKRSDIVAAKTAVGVLNIDASERASEDMSLENLDEPDGKLSYQELGIAKLSGFREWLALHPIIEGSENASKMIIFAHHHKVLDGVQEFICEKGTSFVRIDGNTLARDRQSAVVSFRSSPEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTLMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSCTTDGKYDAKKEIEVEGISYLDSSLKIDNCEEQSSCKDALGETQLATQPSEVNPNESEANQNDKTDEGTCVNNSTQSSNIMVDNVSCQDLGKASGLDGTCGVDVFDAVEGFQKCFEDKEQLKDMKSVSTTEADDDQSVHPVETDGHCSNQVDFLRFEVSPYTGRIHLYTCILGTDERPQPLHENFRPEELELLSSVADDEKQAHDENQKIESVSVKENPAYRSTLLAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSRRRKTPLMEISCPLPSDAVWRKVYLRNGISKKEKEYTQGWSLTDEPLCKLCQKQCLENNARTPEYFEDLFCSLVCYEEYRMRTSNRYLREELFKIEHGVCTNCQLDCHKLVEYIRPLSLERRREYIEKVAPNVAKRKSMLEKLLNEPTEGNAWHADHIVPVYQGGGECKLENLRTLCVACHYDVTAAQCAERRIARAKARKQLKALMNSMKNDIKSAASSKIKDCRRLEDKEGNMPEDELLVEVPGSAYSLADS 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00628 815 Gene3D - 637 774 - -
Cca03g00628 815 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 300 IPR001650 -
Cca03g00628 815 MobiDBLite consensus disorder prediction 332 361 - -
Cca03g00628 815 SMART helicmild6 171 254 IPR001650 -
Cca03g00628 815 Gene3D - 32 353 IPR027417 -
Cca03g00628 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 311 IPR027417 -
Cca03g00628 815 CDD HNHc 706 746 IPR003615 -
Cca03g00628 815 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 769 - -
Cca03g00628 815 CDD SF2_C_SNF 136 265 - -
Cca03g00628 815 Pfam Helicase conserved C-terminal domain 147 254 IPR001650 -
Cca03g00628 815 Pfam HNH endonuclease 712 743 IPR002711 GO:0003676|GO:0004519
Cca03g00628 815 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 3 769 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00628 159 307 RAD5 or RAD16-like Gene Family AT1G11100 33.113 2.67e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00628 K25861 - gmx:100788690 1390.94