Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00626 ATGTCTATGTCTAATTATGAGGAGGTTGCAGAGCTGATATGGGAAAATGGCCAGCTATCCATGCATGGGCTTGGTGGGCTTCAACCCGAAAAGCCCATAACAAGTAGGGCCCACGACACATTAGAGTCTATAGTTCAACAAGCCACGTTTAAATGTTGCCAACAACCATCGAAGTTCACTAGGCAAGGCCATGCCCCTACTAGTATAATAAACTCCTCCATTGGTGCACCATCATCATCCACCAGGAAGCCAACATGCTCCAACACTAACGTTAACGTGCTCCAACAATGTGACATCCTTGgtggtcgtggtcgtggttgtggttgtgctagtgctggtgCCACGTTTTGTAGGGACAACGATGCAACCATGATGACATGGGCTTCTCTTGAATCTGGTCCAACTTTGAAGACCATGGAGGAAGATTCAGCTTGTCATTGTGGATCGGAAATTCGAGACAACCAAGATGACAGAGACAGTAAAGCAGAAATAGCCCAAAGCAACTCTAAGAGACGGAGCCGAATTGCTGCTATTCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAGATAAAAGCCTTGCAGAGGTTGGTGCCTAATGCAAATAAGACTGATAAAGCTTCAATGTTAGATGAGGTGATAAACTACTTAAAGCAGCTTCAAGCACAGATCCAAATGATGAACATGGCAAGCATGCCCCAAATGATGGTGCCTTTGGCCATGCAACAGCAGCTTCAGATGTCAATGCTAGCCAGAATGGGTGGTGGGCTTGGCATGGGAATGGGCTTGGCAAACATAAACAACATGGTAGCCCAAACAAGTGGCCCAAGCCCAAGGTCACTCCCCCAACTCAATATTCAACAAACAACCACAGTAGGAGCTCCACCTGGCACTGCCCCACTATTTGTTGCACCTTCCTTTATGATGCCTTCCATGATTCCTCCAAAGCCCCAACATGCATCCTCACCCTCCATTCCTTTGCCTCATCCATATACTAATGGTCTCAACCAACCAATTAATATGGATATTCTGCACAACATGGCAGCACTTTATCAACAACAGATGAGTCAGAATAATCATCACTTGAGCAGCAGCATCTCCCAACCACACCAAGGTCGTTGA 1131 0.4412 MSMSNYEEVAELIWENGQLSMHGLGGLQPEKPITSRAHDTLESIVQQATFKCCQQPSKFTRQGHAPTSIINSSIGAPSSSTRKPTCSNTNVNVLQQCDILGGRGRGCGCASAGATFCRDNDATMMTWASLESGPTLKTMEEDSACHCGSEIRDNQDDRDSKAEIAQSNSKRRSRIAAIHNQSERKRRDRINQKIKALQRLVPNANKTDKASMLDEVINYLKQLQAQIQMMNMASMPQMMVPLAMQQQLQMSMLARMGGGLGMGMGLANINNMVAQTSGPSPRSLPQLNIQQTTTVGAPPGTAPLFVAPSFMMPSMIPPKPQHASSPSIPLPHPYTNGLNQPINMDILHNMAALYQQQMSQNNHHLSSSISQPHQGR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00626 376 PANTHER TRANSCRIPTION FACTOR PIF7 6 370 - -
Cca03g00626 376 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 6 370 IPR031066 -
Cca03g00626 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 233 IPR036638 GO:0046983
Cca03g00626 376 Coils Coil 180 207 - -
Cca03g00626 376 MobiDBLite consensus disorder prediction 63 84 - -
Cca03g00626 376 CDD bHLH_AtPIF_like 174 236 - -
Cca03g00626 376 Pfam Helix-loop-helix DNA-binding domain 179 224 IPR011598 GO:0046983
Cca03g00626 376 Gene3D - 167 234 IPR036638 GO:0046983
Cca03g00626 376 MobiDBLite consensus disorder prediction 150 173 - -
Cca03g00626 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 174 223 IPR011598 GO:0046983
Cca03g00626 376 MobiDBLite consensus disorder prediction 150 168 - -
Cca03g00626 376 SMART finulus 180 229 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00626 Cca-Chr3 11006697 11020142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00626 8 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 40.984 1.81e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00626 HLH 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00626 - - gmx:102667566 485.723