Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00620 ATGAGTTTTTCTCAAAGAAGAAAAGCACATAGCACAAGAGAAGCACCATTATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTAGTTGCTGGGGATTCTTTTAATTCATTGGACTCGGACAAACAAGTTTTGCTGAAGCTGAAAACGTACTTGCAAACCCAAACTCGTGCAAATAGAGGAGGCTACACCAGCTGGAACAAGAACAGTTCAAACCCTTGTGTGTGGTCAGGAATCAGGTGCGGGTTCTTCAACAACACAGCACGGAGGGTTGTGAAAGTAGACATCTCTGCCAGTGACATATATGGTAACATATTCCCCAACTTTTCTCAGCTCACTGAGCTCACACACCTTGACATCTCTTGGAACTCTCTCTCTGGGGTCATTCCTGAGGACTTGAGGAGGAGCCACAAGCTTGTGTATCTTAACCTCTCTCATAATACTCTTGAGGGGGAGTTGAATTTGAAGGGCTTGGCACAGTTGCAGACACTGGACTTGTCTGTTAACAGGTTTGTTGGGGGACTTGGGGTGAGTTTTCCTGCCATTTGTGAGAACTTGGTGACTTTGAATATTTCAGACAATCACTTGAGTGGTGAGGTTGGTGGTTTCTTTGACCAATGCTTGAGGCTGCAGTATTTGGATTTGAGCACCAACCATCTTAGTGGGGCCCTATGGAGTGGGTTTTCCAGGCTGAGGGAGTTTTCAGTGTCAGAGAATTTTCTCCATGGGGTTGTTTCTCCTCAGGCTTTTCCAAGGAACTGTAGCCTTGAAAAACTGGATCTTTCGGTGAATGAATTTGTTGGTGAGGCCCCCAAGGAGGTTGCTAACTGCAAGAATTTGGTGGTTCTTAACCTCTCTAGTAACAAGTTCAGTGGAGATGTTCCAAGTGAAATTGGTTCCATTTCTGTTCTTGAGTCATTGTTCTTGGGGAACAACACTTTCTCAAGGGATATCCCAGAGGCCCTTTTGAACTTGACCAATTTGTTCATCTTGGATTTGAGCAGAAACGGATTTGGTGGGGAGGTGCAGAAGATTTTTGGGAAATTCAAGCAAGTCAAGTTTCTTCTGCTGCACTCAAATTCCTACACTGGAGGGTTGAACACATCAGGCATTTTCACTTTGACCAACCTTAGCCGCTTGGAATTGAGTTCCAATAACTTTTCAGGTCCATTACCTGTTGAAATCTCACACATGTCTCGACTCACTTTCTTAACCTTAACCAACAACCAGTTCACTGGACCTGTTCCATCTGAATTGGGAAAGTTGACTTACCTTGTGGCACTTGAACTTGCCTTCAACAATTTCAGTGGCTCAATTCCACCGAGCCTTGGAAATTTGACTTCTCTCTTGTGGTTAAACCTTGCAAATAATTCATTAACAGGAGAAATCCCACTAGAGTTGGGAAACTGCTCAAGCTTGTTGTGGTTGAACCTTGCAAACAACAAACTCTCTGGAAAATTTCCTCCTGAGCTAACAAGAATTGGTAGGGATGCAACGGCCACATTTGAATCAAATAAAAAAAGCATAGGCCAAGTTGTTGCTGGCAATAGTGAATGCTCATCAATGAAGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGAATACCATCCTAACAAGGAAGAATTGTAGGGCCCTTTGGAACAGGTTGCTCAAAGGATATGGTATTTTCCCCACTTGTGAATCTGAGCCCTCTTCTAGATCATCACACATATCAGGGTATGTTCAGCTAACTGGTAACCAGTTGAGTGGTGATATTCCTTCAGAAATTGCGACCATGGTGAACTTCAGCATGTTGCATTTGGGGGATAACAAGTTCACTGGGAAATTCCCTCCGCAGATGGTAACTTTGCCACTTGTAGTCTTGAACATGACTAGAAACAATTTTTCTGGTGAAATTCCAAATGAAATTGGCAGCATGAAGTGCCTAGAGAATCTTGATTTGTCTTGGAACAATTTCTCTGGAGCATTTCCTATAAGTTTGGCACACTTGGATGCGCTTAGCAGGTTCAACATATCATACAATCCCCTCATATCAGGTATAGTCCCACCAGCTGGACACTTACTCACTTTTGACAAGGACTCATATTTGGGTGACCCTCACTTGAACCTCCCTGAGTTCTTAAACTCATCTGGCGACAGAAATAGCACTCTACACATAGTCTTGAAAAATCCCACAAAATGGTCTTTGATTTTGGCTGTAGCCCTGGCTGTCATTGTCTTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCATCAGTGGAACAAAGATACCTCATGAAGAACACAAAGAAGCAAGCACATGACTCAGGAAGCTCAGGATCCTCAACATGGTATTCCGACACTGTTAAGATATTCCACCTGAACAAGACAGTTTTCACACACGCAGACATCTTGGAAGCAACCTCCAACTTCACAGAGGAGAGAGTGATAGGAAGGGGTGGCTATGGAACAGTGTATAGAGGGATGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTACAAAGGGAAGGAACTGAGGGGGAGAAAGAATTCAGAGCTGAAATGAAGGTTCTCAGTGGTCAAGGCTTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGCTGGTGCCTCTATGGTTCACAGAAAGTACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAAGTTGTGACAGACACAAAAAGGTTGACATGTAGAAGGCGCATAGAAGTGGCAATTGATGTTGCTAGAGCACTAGTCTTTCTACACCATGAGTGTTACCCTGCTATTGTGCACAGAGATGTGAAAGCTAGTAATGTGTTGCTAGACAAGGATGGAAAGGCCAAGGTAACAGACTTTGGACTTGCTAGGATTGTTGATGTTGGAGATAGTCATGTGAGTACTGTAGTGGCTGGCACAGTGGGGTATGTGGCACCAGAATATGGACAAACATGGCAAGCCACCACAAAAGGGGATGTGTATAGTTTTGGGGTGTTGGCTATGGAGCTAGCAACTGGGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAGTGGACTAGGCGTGTTATGATGGATTCTGAGAGACAAGGGTTAGCTCAATCTCAATCTTTGCCAGTGTTGTTGAAGGGTTCAAAGGAGATGGGGGAGTTGCTCCATGTTGGAGTGAAGTGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTCATTAAGATATACAATCCCGTTGGGGACTCAAATTATGGCCACCTTGTCTAG 3327 0.4415 MSFSQRRKAHSTREAPLLMSEQETDSWGFLFVCFLILFSGKLVAGDSFNSLDSDKQVLLKLKTYLQTQTRANRGGYTSWNKNSSNPCVWSGIRCGFFNNTARRVVKVDISASDIYGNIFPNFSQLTELTHLDISWNSLSGVIPEDLRRSHKLVYLNLSHNTLEGELNLKGLAQLQTLDLSVNRFVGGLGVSFPAICENLVTLNISDNHLSGEVGGFFDQCLRLQYLDLSTNHLSGALWSGFSRLREFSVSENFLHGVVSPQAFPRNCSLEKLDLSVNEFVGEAPKEVANCKNLVVLNLSSNKFSGDVPSEIGSISVLESLFLGNNTFSRDIPEALLNLTNLFILDLSRNGFGGEVQKIFGKFKQVKFLLLHSNSYTGGLNTSGIFTLTNLSRLELSSNNFSGPLPVEISHMSRLTFLTLTNNQFTGPVPSELGKLTYLVALELAFNNFSGSIPPSLGNLTSLLWLNLANNSLTGEIPLELGNCSSLLWLNLANNKLSGKFPPELTRIGRDATATFESNKKSIGQVVAGNSECSSMKRWIPADYPPFSFVNTILTRKNCRALWNRLLKGYGIFPTCESEPSSRSSHISGYVQLTGNQLSGDIPSEIATMVNFSMLHLGDNKFTGKFPPQMVTLPLVVLNMTRNNFSGEIPNEIGSMKCLENLDLSWNNFSGAFPISLAHLDALSRFNISYNPLISGIVPPAGHLLTFDKDSYLGDPHLNLPEFLNSSGDRNSTLHIVLKNPTKWSLILAVALAVIVFGLLFLVICFLVKSPSVEQRYLMKNTKKQAHDSGSSGSSTWYSDTVKIFHLNKTVFTHADILEATSNFTEERVIGRGGYGTVYRGMFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGQGFNWPHPNLVTLYGWCLYGSQKVLVYEYIGGGSLEEVVTDTKRLTCRRRIEVAIDVARALVFLHHECYPAIVHRDVKASNVLLDKDGKAKVTDFGLARIVDVGDSHVSTVVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWTRRVMMDSERQGLAQSQSLPVLLKGSKEMGELLHVGVKCTHDAPQARPNMKEVLAMLIKIYNPVGDSNYGHLV 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00620 1108 Pfam Protein kinase domain 823 1090 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 259 355 IPR032675 -
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 451 631 IPR032675 -
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 634 717 IPR032675 -
Cca03g00620 1108 Pfam Leucine rich repeat N-terminal domain 52 94 IPR013210 -
Cca03g00620 1108 SUPERFAMILY L domain-like 243 501 - -
Cca03g00620 1108 Gene3D - 516 582 - -
Cca03g00620 1108 Gene3D Phosphorylase Kinase; domain 1 787 902 - -
Cca03g00620 1108 SUPERFAMILY Protein kinase-like (PK-like) 802 1093 IPR011009 -
Cca03g00620 1108 Gene3D Transferase(Phosphotransferase) domain 1 904 1097 - -
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 50 191 IPR032675 -
Cca03g00620 1108 CDD STKc_IRAK 829 1095 - -
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 192 258 IPR032675 -
Cca03g00620 1108 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 20 1099 - -
Cca03g00620 1108 SMART LRR_typ_2 387 411 IPR003591 -
Cca03g00620 1108 SMART LRR_typ_2 314 338 IPR003591 -
Cca03g00620 1108 SMART LRR_typ_2 459 483 IPR003591 -
Cca03g00620 1108 SMART LRR_typ_2 125 149 IPR003591 -
Cca03g00620 1108 SUPERFAMILY L domain-like 103 311 - -
Cca03g00620 1108 SUPERFAMILY L domain-like 590 704 - -
Cca03g00620 1108 SMART serkin_6 823 1099 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00620 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 945 957 IPR008271 GO:0004672|GO:0006468
Cca03g00620 1108 Gene3D Ribonuclease Inhibitor 356 450 IPR032675 -
Cca03g00620 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 20 1099 - -
Cca03g00620 1108 ProSiteProfiles Protein kinase domain profile. 823 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00620 1108 Pfam Leucine rich repeat 122 162 IPR001611 GO:0005515
Cca03g00620 1108 ProSitePatterns Protein kinases ATP-binding region signature. 829 852 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00620 Cca-Chr3 10882670 10886269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00620 104 1092 Receptor kinase-like Gene Family AT1G55610 33.365 4.75e-144 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Cca03g00620 Pkinase 1.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00620 - - gmx:100813425 1808.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00620 03 10882670 10886269 Cca03g00620 03 10882670 10886269 ECH