Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00620 | ATGAGTTTTTCTCAAAGAAGAAAAGCACATAGCACAAGAGAAGCACCATTATTAATGTCAGAGCAGGAAACCGATTCATGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTTTCTCAGGTAAATTAGTTGCTGGGGATTCTTTTAATTCATTGGACTCGGACAAACAAGTTTTGCTGAAGCTGAAAACGTACTTGCAAACCCAAACTCGTGCAAATAGAGGAGGCTACACCAGCTGGAACAAGAACAGTTCAAACCCTTGTGTGTGGTCAGGAATCAGGTGCGGGTTCTTCAACAACACAGCACGGAGGGTTGTGAAAGTAGACATCTCTGCCAGTGACATATATGGTAACATATTCCCCAACTTTTCTCAGCTCACTGAGCTCACACACCTTGACATCTCTTGGAACTCTCTCTCTGGGGTCATTCCTGAGGACTTGAGGAGGAGCCACAAGCTTGTGTATCTTAACCTCTCTCATAATACTCTTGAGGGGGAGTTGAATTTGAAGGGCTTGGCACAGTTGCAGACACTGGACTTGTCTGTTAACAGGTTTGTTGGGGGACTTGGGGTGAGTTTTCCTGCCATTTGTGAGAACTTGGTGACTTTGAATATTTCAGACAATCACTTGAGTGGTGAGGTTGGTGGTTTCTTTGACCAATGCTTGAGGCTGCAGTATTTGGATTTGAGCACCAACCATCTTAGTGGGGCCCTATGGAGTGGGTTTTCCAGGCTGAGGGAGTTTTCAGTGTCAGAGAATTTTCTCCATGGGGTTGTTTCTCCTCAGGCTTTTCCAAGGAACTGTAGCCTTGAAAAACTGGATCTTTCGGTGAATGAATTTGTTGGTGAGGCCCCCAAGGAGGTTGCTAACTGCAAGAATTTGGTGGTTCTTAACCTCTCTAGTAACAAGTTCAGTGGAGATGTTCCAAGTGAAATTGGTTCCATTTCTGTTCTTGAGTCATTGTTCTTGGGGAACAACACTTTCTCAAGGGATATCCCAGAGGCCCTTTTGAACTTGACCAATTTGTTCATCTTGGATTTGAGCAGAAACGGATTTGGTGGGGAGGTGCAGAAGATTTTTGGGAAATTCAAGCAAGTCAAGTTTCTTCTGCTGCACTCAAATTCCTACACTGGAGGGTTGAACACATCAGGCATTTTCACTTTGACCAACCTTAGCCGCTTGGAATTGAGTTCCAATAACTTTTCAGGTCCATTACCTGTTGAAATCTCACACATGTCTCGACTCACTTTCTTAACCTTAACCAACAACCAGTTCACTGGACCTGTTCCATCTGAATTGGGAAAGTTGACTTACCTTGTGGCACTTGAACTTGCCTTCAACAATTTCAGTGGCTCAATTCCACCGAGCCTTGGAAATTTGACTTCTCTCTTGTGGTTAAACCTTGCAAATAATTCATTAACAGGAGAAATCCCACTAGAGTTGGGAAACTGCTCAAGCTTGTTGTGGTTGAACCTTGCAAACAACAAACTCTCTGGAAAATTTCCTCCTGAGCTAACAAGAATTGGTAGGGATGCAACGGCCACATTTGAATCAAATAAAAAAAGCATAGGCCAAGTTGTTGCTGGCAATAGTGAATGCTCATCAATGAAGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGAATACCATCCTAACAAGGAAGAATTGTAGGGCCCTTTGGAACAGGTTGCTCAAAGGATATGGTATTTTCCCCACTTGTGAATCTGAGCCCTCTTCTAGATCATCACACATATCAGGGTATGTTCAGCTAACTGGTAACCAGTTGAGTGGTGATATTCCTTCAGAAATTGCGACCATGGTGAACTTCAGCATGTTGCATTTGGGGGATAACAAGTTCACTGGGAAATTCCCTCCGCAGATGGTAACTTTGCCACTTGTAGTCTTGAACATGACTAGAAACAATTTTTCTGGTGAAATTCCAAATGAAATTGGCAGCATGAAGTGCCTAGAGAATCTTGATTTGTCTTGGAACAATTTCTCTGGAGCATTTCCTATAAGTTTGGCACACTTGGATGCGCTTAGCAGGTTCAACATATCATACAATCCCCTCATATCAGGTATAGTCCCACCAGCTGGACACTTACTCACTTTTGACAAGGACTCATATTTGGGTGACCCTCACTTGAACCTCCCTGAGTTCTTAAACTCATCTGGCGACAGAAATAGCACTCTACACATAGTCTTGAAAAATCCCACAAAATGGTCTTTGATTTTGGCTGTAGCCCTGGCTGTCATTGTCTTTGGACTTCTTTTCCTTGTAATATGTTTCTTGGTGAAAAGTCCATCAGTGGAACAAAGATACCTCATGAAGAACACAAAGAAGCAAGCACATGACTCAGGAAGCTCAGGATCCTCAACATGGTATTCCGACACTGTTAAGATATTCCACCTGAACAAGACAGTTTTCACACACGCAGACATCTTGGAAGCAACCTCCAACTTCACAGAGGAGAGAGTGATAGGAAGGGGTGGCTATGGAACAGTGTATAGAGGGATGTTTCCAGATGGGAGAGAAGTGGCAGTGAAGAAGCTACAAAGGGAAGGAACTGAGGGGGAGAAAGAATTCAGAGCTGAAATGAAGGTTCTCAGTGGTCAAGGCTTTAACTGGCCTCATCCAAACCTTGTCACACTCTATGGCTGGTGCCTCTATGGTTCACAGAAAGTACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGAAGTTGTGACAGACACAAAAAGGTTGACATGTAGAAGGCGCATAGAAGTGGCAATTGATGTTGCTAGAGCACTAGTCTTTCTACACCATGAGTGTTACCCTGCTATTGTGCACAGAGATGTGAAAGCTAGTAATGTGTTGCTAGACAAGGATGGAAAGGCCAAGGTAACAGACTTTGGACTTGCTAGGATTGTTGATGTTGGAGATAGTCATGTGAGTACTGTAGTGGCTGGCACAGTGGGGTATGTGGCACCAGAATATGGACAAACATGGCAAGCCACCACAAAAGGGGATGTGTATAGTTTTGGGGTGTTGGCTATGGAGCTAGCAACTGGGAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAGTGGACTAGGCGTGTTATGATGGATTCTGAGAGACAAGGGTTAGCTCAATCTCAATCTTTGCCAGTGTTGTTGAAGGGTTCAAAGGAGATGGGGGAGTTGCTCCATGTTGGAGTGAAGTGCACACATGATGCACCACAGGCTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTCATTAAGATATACAATCCCGTTGGGGACTCAAATTATGGCCACCTTGTCTAG | 3327 | 0.4415 | MSFSQRRKAHSTREAPLLMSEQETDSWGFLFVCFLILFSGKLVAGDSFNSLDSDKQVLLKLKTYLQTQTRANRGGYTSWNKNSSNPCVWSGIRCGFFNNTARRVVKVDISASDIYGNIFPNFSQLTELTHLDISWNSLSGVIPEDLRRSHKLVYLNLSHNTLEGELNLKGLAQLQTLDLSVNRFVGGLGVSFPAICENLVTLNISDNHLSGEVGGFFDQCLRLQYLDLSTNHLSGALWSGFSRLREFSVSENFLHGVVSPQAFPRNCSLEKLDLSVNEFVGEAPKEVANCKNLVVLNLSSNKFSGDVPSEIGSISVLESLFLGNNTFSRDIPEALLNLTNLFILDLSRNGFGGEVQKIFGKFKQVKFLLLHSNSYTGGLNTSGIFTLTNLSRLELSSNNFSGPLPVEISHMSRLTFLTLTNNQFTGPVPSELGKLTYLVALELAFNNFSGSIPPSLGNLTSLLWLNLANNSLTGEIPLELGNCSSLLWLNLANNKLSGKFPPELTRIGRDATATFESNKKSIGQVVAGNSECSSMKRWIPADYPPFSFVNTILTRKNCRALWNRLLKGYGIFPTCESEPSSRSSHISGYVQLTGNQLSGDIPSEIATMVNFSMLHLGDNKFTGKFPPQMVTLPLVVLNMTRNNFSGEIPNEIGSMKCLENLDLSWNNFSGAFPISLAHLDALSRFNISYNPLISGIVPPAGHLLTFDKDSYLGDPHLNLPEFLNSSGDRNSTLHIVLKNPTKWSLILAVALAVIVFGLLFLVICFLVKSPSVEQRYLMKNTKKQAHDSGSSGSSTWYSDTVKIFHLNKTVFTHADILEATSNFTEERVIGRGGYGTVYRGMFPDGREVAVKKLQREGTEGEKEFRAEMKVLSGQGFNWPHPNLVTLYGWCLYGSQKVLVYEYIGGGSLEEVVTDTKRLTCRRRIEVAIDVARALVFLHHECYPAIVHRDVKASNVLLDKDGKAKVTDFGLARIVDVGDSHVSTVVAGTVGYVAPEYGQTWQATTKGDVYSFGVLAMELATGRRAVDGGEECLVEWTRRVMMDSERQGLAQSQSLPVLLKGSKEMGELLHVGVKCTHDAPQARPNMKEVLAMLIKIYNPVGDSNYGHLV | 1108 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00620 | 1108 | Pfam | Protein kinase domain | 823 | 1090 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 259 | 355 | IPR032675 | - | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 451 | 631 | IPR032675 | - | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 634 | 717 | IPR032675 | - | |
Cca03g00620 | 1108 | Pfam | Leucine rich repeat N-terminal domain | 52 | 94 | IPR013210 | - | |
Cca03g00620 | 1108 | SUPERFAMILY | L domain-like | 243 | 501 | - | - | |
Cca03g00620 | 1108 | Gene3D | - | 516 | 582 | - | - | |
Cca03g00620 | 1108 | Gene3D | Phosphorylase Kinase; domain 1 | 787 | 902 | - | - | |
Cca03g00620 | 1108 | SUPERFAMILY | Protein kinase-like (PK-like) | 802 | 1093 | IPR011009 | - | |
Cca03g00620 | 1108 | Gene3D | Transferase(Phosphotransferase) domain 1 | 904 | 1097 | - | - | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 50 | 191 | IPR032675 | - | |
Cca03g00620 | 1108 | CDD | STKc_IRAK | 829 | 1095 | - | - | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 192 | 258 | IPR032675 | - | |
Cca03g00620 | 1108 | PANTHER | LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN | 20 | 1099 | - | - | |
Cca03g00620 | 1108 | SMART | LRR_typ_2 | 387 | 411 | IPR003591 | - | |
Cca03g00620 | 1108 | SMART | LRR_typ_2 | 314 | 338 | IPR003591 | - | |
Cca03g00620 | 1108 | SMART | LRR_typ_2 | 459 | 483 | IPR003591 | - | |
Cca03g00620 | 1108 | SMART | LRR_typ_2 | 125 | 149 | IPR003591 | - | |
Cca03g00620 | 1108 | SUPERFAMILY | L domain-like | 103 | 311 | - | - | |
Cca03g00620 | 1108 | SUPERFAMILY | L domain-like | 590 | 704 | - | - | |
Cca03g00620 | 1108 | SMART | serkin_6 | 823 | 1099 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca03g00620 | 1108 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 945 | 957 | IPR008271 | GO:0004672|GO:0006468 | |
Cca03g00620 | 1108 | Gene3D | Ribonuclease Inhibitor | 356 | 450 | IPR032675 | - | |
Cca03g00620 | 1108 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 20 | 1099 | - | - | |
Cca03g00620 | 1108 | ProSiteProfiles | Protein kinase domain profile. | 823 | 1095 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cca03g00620 | 1108 | Pfam | Leucine rich repeat | 122 | 162 | IPR001611 | GO:0005515 | |
Cca03g00620 | 1108 | ProSitePatterns | Protein kinases ATP-binding region signature. | 829 | 852 | IPR017441 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00620 | Cca-Chr3 | 10882670 | 10886269 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g00620 | 104 | 1092 | Receptor kinase-like Gene Family | AT1G55610 | 33.365 | 4.75e-144 | 461 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-Xb-2 | Cca03g00620 | Pkinase | 1.8e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00620 | - | - | gmx:100813425 | 1808.88 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g00620 | 03 | 10882670 | 10886269 | Cca03g00620 | 03 | 10882670 | 10886269 | ECH |