Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00618 ATGGGGTGCGTGAGTTCGAAGCAAGCGGTGTCGGTGACGCCCGCGATTGACCACTCCGGCGCCTTTCGCGCCAATGCCGCCGGCTTGGGCGAGTCGGagaggaaagaaaagcggaacaggaagaggaacgagTCAGGCGGAGCGAGTCAGAGCGAGGTAGGTGAGTCGGGGAGAACGAGTTCGAATTCGAATTGCGACTCGCTCAGCTTCAGGTTGGGGAACCTCCAAAAGTACGTGCAGGGAGAACACGTGGCCGCCGGCTGGCCGGCGTGGCTGAGCGCCGTCGCCGGCGAAGCCATTCACGGCTGGTTCCCCCTCCGCGCCGACGCCTTCGAAAAACTCGAGAAGATAGGGCAGGGAACGTATAGTAGCGTGTTTCGTGCGAGGGAGATTGAGACGGGGAAGATAGTGGCATTGAAGAAGGTGCGGTTCGATAACTTCGAACCGGAGAGTGTGCGGTTTATGGCGCGTGAGATTATGATTCTGCGGCGGCTTCATCATCCCAATGTTATAAAGCTCGAGGGCTTGATTACTTCGAGGTTGTCGTGCAGCATCTACCTTGTCTTTGAGTACATGGAGCATGACATTACAGGGCTCTTGTCTTCCCCTGACATCAAGTTCACTGAACCGCAGATTAAGTGCTACATGAAGCAGTTGTTGGCTGGTCTTGAGCACTGTCACTTGCGGGGAGTGATGCACAGGGACATTAAGGGGTCGAATCTTTTGGTGAATAATGAAGGGGTTTTGAAGGTGGCGGATTTTGGATTGGCGAATTATGTCAATTCTGGGCACGGGCAACCTCTGACTAGTCGTGTTGTCACCTTGTGGTACCGGCCGCCGGAGCTTTTGCTTGGCTCGACAGATTATGGTCCGACCGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCGGAGCTGCTTGTCGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATTTTCAAGCTCTGTGGCTCCCCACCTGATGAATATTGGAAAAAGACCAGACTTCCTCATGCAACTTTATTTAAGCCACAGCAACCATATGATAGTTGCCTTCGACAATCCTTTAAAGATATCCCAGCGACCAGTGTACATCTGCTACAAACTCTTCTTTCTGTAGAACCATACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGACTATTTCAAAACAAGACCTTTTGCGTGTGATCCATCAAGCTTGCCGATATACCCACCTAGCAAGGAAATCGATGCAAAACACAGGGAGGAGTCAAGGAAAAAGATTAGTGGACGAGTTCGTGGAACTGAAACCAGAAAACCATCAAGAAAGCCACTAGGATTCAACAAACTAGCCCCTGCAGAGGATTTGGCAAGTCGGACTCAGACTTCACAAAAGGTCAATGGTAGGTCTTTCCGCGTCCTTGAAGAAGAGAAGACTAAAATAGGTGACAAGGCACAAAAGCTATCCAGTGGTAAACCTGAAGATGCTTCCCATATGAAGAATGCATCTCCAGGAGATATTCCCCTTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCATGGGCAAAAAGCCGTAAAGATGACACTTCATTTCGATCCCACTGTCGAACTATTTCAAGAGGACATATTTTCAATCCATTAGAACCTTCTACATTAAATTCAAGGAATAATTTGGACACCACAAACCAGGAAAATAAGGAGTTTTGTGTGGCATACCCCAAATCTAGGGGCCATGACATACTTGAAATTCCGAAGTTTCCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGATGCTTCAGATGAGTACCACTCGCAAGAATTGTCTATGGCCCTTTATCACAGAGAAGATTCATCATCCAAGAGAAGTAACCTGAGTTTTCAAGATCAAGGAGAAAAGGTTGAATTTTCTGGACCCCTACTATCTCAAATGCACACAGTTGATGAGCTATTGGAAAAGCATGAACGTCACATCCGGCAAACTGTCCGGAGATCATGGTTTCAGAGAGGTAAGAGGCATGGGAAGTAA 2046 0.4751 MGCVSSKQAVSVTPAIDHSGAFRANAAGLGESERKEKRNRKRNESGGASQSEVGESGRTSSNSNCDSLSFRLGNLQKYVQGEHVAAGWPAWLSAVAGEAIHGWFPLRADAFEKLEKIGQGTYSSVFRAREIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLHHPNVIKLEGLITSRLSCSIYLVFEYMEHDITGLLSSPDIKFTEPQIKCYMKQLLAGLEHCHLRGVMHRDIKGSNLLVNNEGVLKVADFGLANYVNSGHGQPLTSRVVTLWYRPPELLLGSTDYGPTVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRQSFKDIPATSVHLLQTLLSVEPYKRGTATSALSSDYFKTRPFACDPSSLPIYPPSKEIDAKHREESRKKISGRVRGTETRKPSRKPLGFNKLAPAEDLASRTQTSQKVNGRSFRVLEEEKTKIGDKAQKLSSGKPEDASHMKNASPGDIPLSGPLQVSTSSGFAWAKSRKDDTSFRSHCRTISRGHIFNPLEPSTLNSRNNLDTTNQENKEFCVAYPKSRGHDILEIPKFPMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSSSKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRQTVRRSWFQRGKRHGK 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00618 681 SUPERFAMILY Protein kinase-like (PK-like) 104 401 IPR011009 -
Cca03g00618 681 MobiDBLite consensus disorder prediction 455 469 - -
Cca03g00618 681 MobiDBLite consensus disorder prediction 411 512 - -
Cca03g00618 681 Gene3D Transferase(Phosphotransferase) domain 1 194 433 - -
Cca03g00618 681 MobiDBLite consensus disorder prediction 46 64 - -
Cca03g00618 681 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 674 - -
Cca03g00618 681 MobiDBLite consensus disorder prediction 414 443 - -
Cca03g00618 681 CDD STKc_CDK9_like 111 395 - -
Cca03g00618 681 PANTHER CELL DIVISION PROTEIN KINASE 1 674 - -
Cca03g00618 681 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Cca03g00618 681 Pfam Protein kinase domain 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00618 681 ProSiteProfiles Protein kinase domain profile. 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00618 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Cca03g00618 681 Gene3D Phosphorylase Kinase; domain 1 99 193 - -
Cca03g00618 681 SMART serkin_6 111 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00618 681 MobiDBLite consensus disorder prediction 470 494 - -
Cca03g00618 681 MobiDBLite consensus disorder prediction 23 64 - -
Cca03g00618 681 MobiDBLite consensus disorder prediction 29 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00618 Cca-Chr3 10754785 10762130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00618 103 454 Core Cell Cycle Gene Families AT5G10270 48.913 6.51e-116 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca03g00618 Pkinase 4.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00618 - - gmx:100803328 1260.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00618 03 10754785 10762130 Cca11g01983 11 45249146 45255190 ECH
Cca03g00618 03 10754785 10762130 Cca03g00618 03 10754785 10762130 ECH