Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00617 ATGGCTCTCTTCCGAAGGTTCTTTTACCGGAAACCGCCCGATCACCTTCTCGAGATCTCCGACAGACTCTATGTTTTTGATTGTTGCTTCTCCAAAAATGTGTTGGAGGAAGAGGAGTACAAGGTTTACATTGGGGGGATTGTGGCTCAGCTACAGGATCACTATCCGGATGCTTCTTTCATGGTGTTCAATTTCAGAGAAGGGCATAAGCGCAGTCGAATTTCAGACATAATGTCTCAGTATGAGATGACAGTTATGGAGTACCCTCTGCAATATGAGGGTTGTCCACTTCTGCCTTTGGAGATGATTCATCACTTCCTTCGGTCAAGCGAAAGCTGGCTGTCTTTGGAGGGGCAACAAAACGTGCTACTGATGCACTGTGAAAGGGGTGGTTGGCCTGTGCTGGCATTTATGCTAGCTGGTCTTCTACTGTATAGGAAACAGTACAATGGGGAACACAAGACTCTTGAAATGGTGTACAAGCAAGCACCTAGAGAGCTTCTCCACCTTTTATCTCCTTTGAATCCACAGCCTTCTCATTTGAGATATCTTCAGTACATTTCCAAGAGGCATTTGGGTTCTCAATGGCCTCCAGCAGAAACACCCTTGTATTTGGATTGCCTCATTCTCAGAGTTCTTCCATTATTTGATGGTGGAAAAGGTTGCAGGCCTGTTGTGCGTGTCTACGGTCCAGACCCTTCAAAACCTGCCAACAGAAGTTCTAAGCTGCTATTCTCAACTGCAATGACCCAAAATCATGTTCGCCACTACCTTCAGGCAGAATGTATGCTGGTGAAAATTGACATCCATTGTCATGTTCAAGGGGATGTGGTTCTTGAGTGCATACATTTAAGTGAAGATTTTGTTCGTGAGGAGATGATGTTTAGAGTCATGTTTCATACTGCATTTGTTCGGTCAAATATATTGACGCTGAGCCGTGATGAAATTGATATTTTGTGGGATGCAAAGGATCAGTTCCCTAAGGACTTCAAATTTGAGGTGCTTTTTTTGGATTCTGATGCTGTCATACCTAATCTCACCTTTGTCAATGTGAGTGGAGATGCAAATGACACAGAATGTGCTTCACCTGAGGCTGAGGAATTCTATGAAGCCGAAGAGATCTTCAGCAATGTAATTGATGCACAGGAAGTAGATGATGGAAGTCATAAAGAGGTCTGGAAAGAGCATTCAGATTCTCATACTTTTCAGGATTCCATGTTAGATGATGGGACTCATCAACAGGTTGATGATGTGAAGTACAAGCTTGACCAGAGGTTGGTATCAGATACTCATGCAGTGAAGGATATTGCAGTGGATGATGGAGCCACTTTTATGATAAAGGAAGTCATTGTGAATACGCATGATGAGTTGGTGGTTATGCAAAACAAGTATGGTGAAGATAACAATGAAACAGAAAAAGAGTTAGGGTCTGAGGAAGGGCAGCGGGTGCTTGATCTTTCCAGACCAAAATATGATAAATTACTTCCTTCTGCCGAAAAGAAACAACTTCCTTCAAACTCAAAGCCTGTGGGAGATCCATTTGTAGCAAAGCAAAAGACTAAACATGAAGAACCACATGGTTTTCAGGCAAAACAAACAAAACCCTATGCAACAACTACGTGGATTCCTTCTAATAAGGGTTCTTATCAAGAACCAATGCATGTCTCATATCCACCATCAAGGAATAATAATTCACCAGCTACACTGTCAAATGTCACCTCTGCAAAGGACAAAATTATTGATGCCAAAGGAAAATCTACTTCAGGTTCTCATGCCTCAGAAACAATTGTTTCTATGGACATGACAAATGATCTGAAAAGCTGTAGGGATAATTCCAAATCTTCAGACAACATAGCTGAAATAGACTCAAACCCTCAACTATCATCATTACTCAGAGTCAAAGAGACATCTCTTCAGTCACCACAACAAAGCTACGGCCGAATGTTACAACTTCATCCTCCTCCACCTcctccacctccacctccacctccacctcAATTTCTTGAACAAAATAGAGTCATATctcgtctaccaccaccaccaccacctcctcctcctcctcctATGTCGTCTACAAATGGAGCTCCACTCCTTCCACCCTCAAAATCTCCAACACCATTTAAAGCTTCATCTCGTGCATCCCCACTGCCACATACACCTCAATCTCCTTTAAGTAAATctccaccactgcctcctcctttaagtactgctccaccaccaccacctcttcctccttctTTATGTAGAGCCCCACCTCCACCACCACCTCTTCCATCATCAAGTGGAGCACCACCTCCACCACCACCTCCTTCATTGTCTAGAACTCCACCTCCCCCGCCTCCAACTCGTGGACCACCACCACCTCCAATGCATGGAGGCCCATCTCCTCCACCACCTCCAGCTGGCCGAGGCCCACCTCCAACAGGATCTCGGGCTCTTGGTGCTCTTGCTTCTCTTGGACCTCTAGGTGGTGCTCCTTTTCCACTAACTGGAACTGATCCAAGGGGGAGAGGACGTGGACCTGCACGTTCTACAGGTGCTGGTGCTATGGCAACTCGGAGATCTTCCTTAAAGCCTTTGCATTGGAGTAAGGTAACAAGGGCATTGCAAGGAAGTTTATGGGACGAATTACAAAGACGTGGAGAACATCAAATATCACAAGAGTTTGACGTTATGGAGATAGAGAAGCTTTTTTCTGCAAATGTTCCAAAACCTGCTGATTTGGATGGTAAATTTGGTGGGCGGCGCAAATCTGTTGGATCCAAAACTGACAAAATTCACTTGATTGATCTAAGGAGGGCCAATAATACTGAAATTATGCTCACAAAGGTTAAGATGCCACTTCCTGATATGATGGCTGCAGTACTGGCTATGGATGATTCAGTGTTAGATGTTGATCAGGTGGAAAATCTCATTAAATTTTGTCCTACCAAAGAGGAGATGGAGCTTTTGAAGGGATACACTGGTGATCAGGAGAATTTGGGGAAGTGTGAAAAGTATTTTTTGGAGCTGATGAAAGTGCCAAGAGTGGAGTCAAAATTCAGAGTATTCGCTTTCAAGATTCAGTTTGGGACTCAGATTACAGAGTTTAAGAAGAGTTTAAAAACAGTGAACTCTGCCTGTGAAGAGGTTCGAAACTCATTCAAACTGAAAGAGATTATGAAGAAAATTCTTTATTTGGGTAACACATTGAATCAAGGAACAGCACGGGGATCTGCTGTTGGATTCAAGTTGGATAGTCTTTTAAAACTAACCGACACTCGTGCCTCAAACAGTAAAATGACACTGATGCATTTTCTTTGTAAGGTCCTAGCTGAAAGGTTTCCTGGACTCCTTGATTTTCACCTTGACCTTGTTAGCCTGGAAGCAGCCACTAAGATACAATTGAAGTCATTAGCAGAAGAAATGCAAGCAATCATCAGAGGGATAGAAAAGGTTAAACAGGAGCTTTCTGCATCTGAAAAAGATGGTCCCGTGTCTGAAGTTTTTCGTAAGGTGTTTAGTATTTTTATGTCTGGCTCTTGA 3525 0.4133 MALFRRFFYRKPPDHLLEISDRLYVFDCCFSKNVLEEEEYKVYIGGIVAQLQDHYPDASFMVFNFREGHKRSRISDIMSQYEMTVMEYPLQYEGCPLLPLEMIHHFLRSSESWLSLEGQQNVLLMHCERGGWPVLAFMLAGLLLYRKQYNGEHKTLEMVYKQAPRELLHLLSPLNPQPSHLRYLQYISKRHLGSQWPPAETPLYLDCLILRVLPLFDGGKGCRPVVRVYGPDPSKPANRSSKLLFSTAMTQNHVRHYLQAECMLVKIDIHCHVQGDVVLECIHLSEDFVREEMMFRVMFHTAFVRSNILTLSRDEIDILWDAKDQFPKDFKFEVLFLDSDAVIPNLTFVNVSGDANDTECASPEAEEFYEAEEIFSNVIDAQEVDDGSHKEVWKEHSDSHTFQDSMLDDGTHQQVDDVKYKLDQRLVSDTHAVKDIAVDDGATFMIKEVIVNTHDELVVMQNKYGEDNNETEKELGSEEGQRVLDLSRPKYDKLLPSAEKKQLPSNSKPVGDPFVAKQKTKHEEPHGFQAKQTKPYATTTWIPSNKGSYQEPMHVSYPPSRNNNSPATLSNVTSAKDKIIDAKGKSTSGSHASETIVSMDMTNDLKSCRDNSKSSDNIAEIDSNPQLSSLLRVKETSLQSPQQSYGRMLQLHPPPPPPPPPPPPPQFLEQNRVISRLPPPPPPPPPPPMSSTNGAPLLPPSKSPTPFKASSRASPLPHTPQSPLSKSPPLPPPLSTAPPPPPLPPSLCRAPPPPPPLPSSSGAPPPPPPPSLSRTPPPPPPTRGPPPPPMHGGPSPPPPPAGRGPPPTGSRALGALASLGPLGGAPFPLTGTDPRGRGRGPARSTGAGAMATRRSSLKPLHWSKVTRALQGSLWDELQRRGEHQISQEFDVMEIEKLFSANVPKPADLDGKFGGRRKSVGSKTDKIHLIDLRRANNTEIMLTKVKMPLPDMMAAVLAMDDSVLDVDQVENLIKFCPTKEEMELLKGYTGDQENLGKCEKYFLELMKVPRVESKFRVFAFKIQFGTQITEFKKSLKTVNSACEEVRNSFKLKEIMKKILYLGNTLNQGTARGSAVGFKLDSLLKLTDTRASNSKMTLMHFLCKVLAERFPGLLDFHLDLVSLEAATKIQLKSLAEEMQAIIRGIEKVKQELSASEKDGPVSEVFRKVFSIFMSGS 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00617 1174 MobiDBLite consensus disorder prediction 542 570 - -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 675 703 - -
Cca03g00617 1174 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 188 IPR029021 -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 650 668 - -
Cca03g00617 1174 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Cca03g00617 1174 SUPERFAMILY Formin homology 2 domain (FH2 domain) 860 1171 - -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 605 853 - -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 494 513 - -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 704 720 - -
Cca03g00617 1174 ProSiteProfiles Formin homology-2 (FH2) domain profile. 847 1174 IPR015425 -
Cca03g00617 1174 Coils Coil 1129 1149 - -
Cca03g00617 1174 Gene3D Protein tyrosine phosphatase superfamily 13 205 IPR029021 -
Cca03g00617 1174 Gene3D - 206 336 - -
Cca03g00617 1174 CDD PTP_PTEN-like 16 190 - -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 721 806 - -
Cca03g00617 1174 Pfam Formin Homology 2 Domain 853 1171 IPR015425 -
Cca03g00617 1174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 336 IPR035892 -
Cca03g00617 1174 SMART PTEN_C2_2 198 338 IPR014020 -
Cca03g00617 1174 Gene3D Formin, FH2 domain 848 1173 IPR042201 -
Cca03g00617 1174 SMART it6_source 847 1174 IPR015425 -
Cca03g00617 1174 MobiDBLite consensus disorder prediction 617 647 - -
Cca03g00617 1174 PANTHER FORMIN-J 703 1172 - -
Cca03g00617 1174 PANTHER FORMIN-J 1 705 - -
Cca03g00617 1174 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00617 Cca-Chr3 10714264 10723674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00617 1 577 FH2 protein (formin) Gene Family AT5G07740 59.143 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00617 - - gmx:100779085 1080.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00617 03 10714264 10723674 Cca03g00617 03 10714264 10723674 ECH