Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00614 ATGGCTtccccttcttctccctcttccctcgacctcgccctccgccacgtccacgactacgttctgGAGAATGGGCAAGAAGGTTTGTCATGGGACACACTTAATTATATTAAAGAGCTTGTGCAGAATGGCAATGCGGCATTTAGAGAGAACAGAATGGAAGAGGCAATCAACTTTTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCACAGAACACCATCATCTTCAGAACGTAGGCCATTGAGTGGACTTGAACCCACAACACTTGCTGAATTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATTCAGCAAAATCCTATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATATGAGAAAGCCCGGGAAGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTCCGGGCTTCTCTTCAAAATTTGGAAAGACTGTCATCTAGTTCACTTCAGGCTCCTCTTCAAAATTTGGAAAGACTGTCATCTAGTTCACCGGGGATGAGTACACATGGACAACCAGAGCGTAATGATGATTTTGACTGCACTCTCTGCCTGAAGTTACTGTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGTTCATGCCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGCGTGACATTGAAGAACATCATACAAAAGAATTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGCATGACGGTTTAATAAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTCATACCGTGTCAGAGATTTCCACTCAATATATTTGAACCTCGGTATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCAACAGGTTCCTTAGCTGAATTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCACTTCCAGATGGGCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATTCGTTCTTGGGATCAGGATGGGTATCGTGTTGCAGAAGTTGAATGGATACAGGATATTATGCCACCAGAAGGGACAAGAGAAAGAGAGATTTTACAAGAATTGACGTATAATGCAGCTGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAAGACATGATCAAAGAAAACTGGAGAGACTCGCCAGTGTTGAAGCAATGATGCCCTCACTAAAAGACCCTGAGCGCTTTAGTTTTTGGCTGACTACCCTCTCCAATCGGAGGCCCTCGGAAAGATTGGATCTGCTACGCATAAGAGATACCCCCGAGAGAATTAGACGAGGCCTGATATTTCTCCGACAGGAGGAACAAGGTTGCAGGATTCAGTAA 1500 0.4073 MASPSSPSSLDLALRHVHDYVLENGQEGLSWDTLNYIKELVQNGNAAFRENRMEEAINFYSRANNIKSGDPIILSNRSAAYIRISQYFMHRTPSSSERRPLSGLEPTTLAELGLKDAEKLVELQSNSAKSYLLKANALLLLEKYEKAREVILSGLQVDPFSNSLRASLQNLERLSSSSLQAPLQNLERLSSSSPGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPPEGTREREILQELTYNAAESARSWIGRAKEAARHDQRKLERLASVEAMMPSLKDPERFSFWLTTLSNRRPSERLDLLRIRDTPERIRRGLIFLRQEEQGCRIQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00614 499 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 13 491 - -
Cca03g00614 499 SMART ring_2 210 247 IPR001841 -
Cca03g00614 499 SMART tpr_5 37 70 IPR019734 GO:0005515
Cca03g00614 499 SMART tpr_5 128 161 IPR019734 GO:0005515
Cca03g00614 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 288 IPR013083 -
Cca03g00614 499 SUPERFAMILY TPR-like 36 168 IPR011990 GO:0005515
Cca03g00614 499 Gene3D Tetratricopeptide repeat domain 35 198 IPR011990 GO:0005515
Cca03g00614 499 SMART lon_5 293 491 IPR003111 -
Cca03g00614 499 PANTHER RING FINGER PROTEIN 127 13 491 - -
Cca03g00614 499 ProSiteProfiles Lon N-terminal domain profile. 291 491 IPR003111 -
Cca03g00614 499 ProSitePatterns Zinc finger RING-type signature. 225 234 IPR017907 -
Cca03g00614 499 SUPERFAMILY PUA domain-like 294 489 IPR015947 -
Cca03g00614 499 Pfam Zinc finger, C3HC4 type (RING finger) 210 247 - -
Cca03g00614 499 SUPERFAMILY RING/U-box 205 273 - -
Cca03g00614 499 Pfam ATP-dependent protease La (LON) substrate-binding domain 294 490 IPR003111 -
Cca03g00614 499 ProSiteProfiles Zinc finger RING-type profile. 210 248 IPR001841 -
Cca03g00614 499 Gene3D - 292 393 IPR046336 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00614 198 251 C3H Transcription Factor Family AT1G74990 35.088 2.68e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00614 - - gmx:100802277 833.558
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00614 03 10663469 10673049 Cca03g00614 03 10663469 10673049 ECH