Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00611 ATGAGGGGTGGGAAGAGGAGCATGATAAAGCTTAAGTTTAGCAAGATCTACTCATTTGCTTGTGGAAAAACAACCTTCCAGAGAGATCATTCAAGGATTGGGGGACATGGTCATTCCAGGGTGGTTGTGTGCAATGAAGCAGATAGGTTTGAGGGAGGGGTTTTGAGTTATGTTGATAATTCTGTTAGGTCCACAAAATACACTGTTGCCACTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGGGTGGCTAATTTCTATTTCTTGGTGGCTGGCATCTTGGCCTTCACAAAGCTCACTCCTTACACTGCTGTCAGTGCTATCCTTCCTCTGTCTATCATCATTGGGGCAACCATGGTGAAAGAGGGCATTGAAGATTGGCGCAGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATATTGCATAAAGGTGATGGCGTTTTCGAATATACTGAATGGAAGAATCTGAAAGTTGGGAATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCTGACCTTCTACTGCTTTCCTCCAGTTATGAGGATGCAGTCTGCTATGTTGAGACCATGAACTTGGATGGTGAGACAAATTTGAAGTTAAAACAAGGGTTGGAAGCAACTTCTTCCTTACACGAGGACTTTAAATTCCCTGATTTTAGAGCTGTCATCAAATGTGAAGACCCAAATGCTAATTTGTATTCATTTGTTGGGAGCATGGAGTTTGGAGAGCAAAAATATCCCCTTTCTGCTCAGCAACTTCTTCTGAGAGACTCTAAACTTCGTAATACAGATTATGTGTTTGGAGCAGTCATCTTTACCGGTCATGACACAAAGGTTATTCAAAATTCCACTGATCCCCCTTCAAAAAGAAGCAAAATTGAAAAGAAGATGGATAAGATTATTTACTTCTTGTTTTGTGTTTTATTTCTAATTGCATTTGTTGGATCTATTCTCTTTGGCATTTCAACCAAACGTGACCTGGACAATGGGTTAATGAAAAGATGGTATCTAAGACCAGATAGTTCCACAATTTTCTTTGATCCAAAAAGAGCAGCTGCAGCTGCTATATTTCATTCTTTAACAGCCTTAATGTTATACAACTTCTTCATTCCTATCTCCTTGTATTTCTCAATAGAGATTGTCAAAGTCCTTCAGAGCATCTTCATCAATCGAGATATCCATATGTACTATGAAGAAGCGGACAAACCAGCTCGAGCCCGTACTTCAAACTTGAATGAGGAACTTGGTCAAGTTGACACAATACTGTCCGATAAAACTGGAACTCTAACTTGCAACTCAATGGAGTTCATAAAATGTTCTGTTGCTGGAGTAGCTTATGGCCGTGGTGTGACAGAGGTTGAGCAAGCCTCGGGTAGAAGTAACGGTTCACCTATTCTTCATGAGCATATTAATAGATTAGAATCAAAATCAAATGAAATCAGGGACTCTCCTGATAGAAAAGAACCTATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTCATGCAGATGTTATCCAGAAATTTTTTCGCTTATTGGCAATTTGTCATACTGCCATACCAGAAGTGGATGAGGAAACAGGAAATGTTTCTTATGAGGCTGAATCTCCAGATGAAGCAGCATTTGTGATTGCTTCAAGAGAAGTTGGTTTTAAATTCTACAAAAGGACTCAGACTTGTTTGTCAATGTATGAGTTGGATCCAGTTTCTGGCAATGAAGTTGAAAGAACATACAAGCTTCTCAATGTTTTAGAATTCAATAGCTCAAGAAAGCGGATGTCAGTGATAGTGAAAGATGAAGGAGGAATAATTTTTCTACTCTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCGAGAATGGGAGGAGGTTTGAGGAGAAAACTCTGGAACATGTGCGTGAATATGCTGATGCAGGTCTAAGGACCCTAATACTGGCCTACCGTGAACTTGATGAAGAAGAATACAAGCAGTTTGATGATAAATTTTCTGAAGTAAAAAATTCAGTAGCTGCAGATCGAGAAACGCTGATAGAAGAAGTATCGGATAAGATGGAGAGGAATCTAATCCTTCTCGGTGCCACTGCTGTAGAGGACAAGCTCCAAAATGGGGTTCCTGATTGTATTGACAAGCTTGCCCAAGCAAAGATTAAGGTTTGGGTTTTGACTGGGGATAAAATGGAGACTGCCATCAATATTGGTTTCTCTTGTTGCTTGCTTAGACAAGGAATGAAGCAGATTATAATTCATTTGGAGATTCCAGAAATTCAAGCACTGGAGAAGGTTGGAGACAAGAGGGCTATTGCCAAGGCATCAAGGGAAAGTGTGCACCATCAGATATCTGAAGGGGCTCAACTGCTTTCTGCATCCAGAGGGGCCTGCCAACAGACTTTTGCTCTGATAATTGATGGAAAATCACTTACTTATGCTCTAGAGGATAATATGAAGAACATGTTTCTAGAGCTTGCAAGTCATTGTGCATCTGTTATCTGCTGTCGCTCATCCCCAAAGCAGAAGGCTCTGGTTACTAGGCTGGTCAAATCTGGAACTGGTAAAACAACATTAGCTATTGGTGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCAGATGTAGGGATTGGAATCAGTGGTGTTGAAGGAATGCAGGCCGTCATGTCTAGTGATATTGCAATTGCACAGTTCCGGTATTTGGAAAGATTACTTCTTGTACATGGACATTGGTGTTACCGGAGGATGTCATCAATGATATGCTATTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTCTTGTATGAGGTGTATGCATCATTCTCTGGACAGCCTGCATACAATGACTGGTTTTTGTCTCTCTATAGTGTCTTCTTTTCATCACTACCTGTGATAGCCCTTGGGGTTCTTGATCAGGATGTATCCGCCAGAGCTACTCGATCCTCTTTCCCCTTTCTCTTCTCTGTTCTTCACGACAATCTTGTCATGGCTGAATCAACTCCCCTAGTGGTTTCTTCTCCCCCACCGCCGCCCCCTCCTCCACCCATCAACGCTACACCCCTCAATACCATCCCCTCAAAGAACCCTCCCACTAATCCCCCTCCGTCTCTTACCTTTTCCCACACCATCTCAGAAAAACAAAAGATGTGTTTATATACAAAGTAG 3201 0.4108 MRGGKRSMIKLKFSKIYSFACGKTTFQRDHSRIGGHGHSRVVVCNEADRFEGGVLSYVDNSVRSTKYTVATFLPKSLFEQFRRVANFYFLVAGILAFTKLTPYTAVSAILPLSIIIGATMVKEGIEDWRRKKQDIEVNNRRVILHKGDGVFEYTEWKNLKVGNIVKIMKDEFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLEATSSLHEDFKFPDFRAVIKCEDPNANLYSFVGSMEFGEQKYPLSAQQLLLRDSKLRNTDYVFGAVIFTGHDTKVIQNSTDPPSKRSKIEKKMDKIIYFLFCVLFLIAFVGSILFGISTKRDLDNGLMKRWYLRPDSSTIFFDPKRAAAAAIFHSLTALMLYNFFIPISLYFSIEIVKVLQSIFINRDIHMYYEEADKPARARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGVTEVEQASGRSNGSPILHEHINRLESKSNEIRDSPDRKEPIKGFNFTDERIMNGNWVNEPHADVIQKFFRLLAICHTAIPEVDEETGNVSYEAESPDEAAFVIASREVGFKFYKRTQTCLSMYELDPVSGNEVERTYKLLNVLEFNSSRKRMSVIVKDEGGIIFLLCKGADSVMFERLAENGRRFEEKTLEHVREYADAGLRTLILAYRELDEEEYKQFDDKFSEVKNSVAADRETLIEEVSDKMERNLILLGATAVEDKLQNGVPDCIDKLAQAKIKVWVLTGDKMETAINIGFSCCLLRQGMKQIIIHLEIPEIQALEKVGDKRAIAKASRESVHHQISEGAQLLSASRGACQQTFALIIDGKSLTYALEDNMKNMFLELASHCASVICCRSSPKQKALVTRLVKSGTGKTTLAIGDGANDVGMLQEADVGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSLYSVFFSSLPVIALGVLDQDVSARATRSSFPFLFSVLHDNLVMAESTPLVVSSPPPPPPPPPINATPLNTIPSKNPPTNPPPSLTFSHTISEKQKMCLYTK 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00611 1066 PRINTS P-type cation-transporting ATPase superfamily signature 870 889 - -
Cca03g00611 1066 PRINTS P-type cation-transporting ATPase superfamily signature 426 440 - -
Cca03g00611 1066 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Cca03g00611 1066 MobiDBLite consensus disorder prediction 1017 1048 - -
Cca03g00611 1066 ProSitePatterns E1-E2 ATPases phosphorylation site. 428 434 IPR018303 -
Cca03g00611 1066 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 842 952 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g00611 1066 Pfam Phospholipid-translocating P-type ATPase C-terminal 898 1006 IPR032630 -
Cca03g00611 1066 Pfam Phospholipid-translocating ATPase N-terminal 54 108 IPR032631 -
Cca03g00611 1066 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 8 1001 - -
Cca03g00611 1066 SFLD Haloacid Dehalogenase 410 921 - -
Cca03g00611 1066 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 8 1001 - -
Cca03g00611 1066 Gene3D - 118 288 - -
Cca03g00611 1066 Gene3D - 550 704 IPR023299 GO:0000166
Cca03g00611 1066 CDD P-type_ATPase_APLT_Dnf-like 59 1006 - -
Cca03g00611 1066 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 57 1004 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cca03g00611 1066 Gene3D - 705 910 IPR023214 -
Cca03g00611 1066 SUPERFAMILY Calcium ATPase, transmembrane domain M 57 988 IPR023298 -
Cca03g00611 1066 SFLD p-type atpase 410 921 IPR044492 -
Cca03g00611 1066 SUPERFAMILY HAD-like 421 925 IPR036412 -
Cca03g00611 1066 Pfam Cation transport ATPase (P-type) 538 630 - -
Cca03g00611 1066 MobiDBLite consensus disorder prediction 1017 1051 - -
Cca03g00611 1066 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 673 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00611 Cca-Chr3 10582225 10593282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00611 3 989 Primary Pumps ATPases AT1G68710 75.202 0.0 1557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00611 K01530 - gmx:100798329 1831.22