Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00609 ATGGAGATTAAACCGGGTTTGAGTGCGTACGCTCAGAATCCGAAAGAGGCAGCGGAATCTTTGGTTTCGCTTTTGGATAAAGCGGAGAGTGTTGTTCCTCGTGAATTGCGATCCAAGACACCGGTTCGAGTTGGGGCAACTGCGGGTTTGAGGGCTTTGGAAGGGGATACCTCGGATAGGATCTTGCAAGCGGTAAGGGATTTGCTTAAGGACAGGAGTAGCCTGAAATCCGACGTTGATGCTGTTACAGTGCTGGATGGAACTCAAGAAGGTGCTTATCAATGGCTTCGTTGCTTTCTCCGCCACCTCTCCTCCGATCAATCTCCGGCGAACCACCGATCATTCTCCGGTAGGGCAGAGAAATTAGGAACAATGAGTGAGGTATTTGAAGGGTACGAGCGTCAATACTGTGAGCTATCAGCGAATCTTTCGCGGCATTGCACTGCGGCTTCTGCTCTTGATGGAGAACAGAAGAAGCAGAAACTTTCTGATATAAAAGCTGGACTAGATGATGCTGATACATTGATTCGGAAAATGGACCTTGAGGCTCGGAGTTTGCAGCCAAGTATGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAACAATTTGAAAAGTGAAGTTAAAAGAGTCACGACATCATCTAATGTCAGTCTCACTGCTCGTGATGATTTGTTGGAGTCAGGAAGGGTCGATACACTGGCGGTATCTATCTTATATATCCTTCCTCAGATATGA 750 0.4653 MEIKPGLSAYAQNPKEAAESLVSLLDKAESVVPRELRSKTPVRVGATAGLRALEGDTSDRILQAVRDLLKDRSSLKSDVDAVTVLDGTQEGAYQWLRCFLRHLSSDQSPANHRSFSGRAEKLGTMSEVFEGYERQYCELSANLSRHCTAASALDGEQKKQKLSDIKAGLDDADTLIRKMDLEARSLQPSMKAALLAKLREYKTDLNNLKSEVKRVTTSSNVSLTARDDLLESGRVDTLAVSILYILPQI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00609 249 SUPERFAMILY t-snare proteins 130 216 IPR010989 GO:0016020|GO:0016192
Cca03g00609 249 Gene3D Exopolyphosphatase. Domain 2 86 96 - -
Cca03g00609 249 Coils Coil 191 218 - -
Cca03g00609 249 Pfam Vesicle transport v-SNARE protein N-terminus 136 214 IPR007705 GO:0006886|GO:0016020
Cca03g00609 249 Gene3D - 4 85 - -
Cca03g00609 249 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 125 241 - -
Cca03g00609 249 PANTHER VESICLE TRANSPORT V-SNARE 13-LIKE 125 241 - -
Cca03g00609 249 Gene3D - 125 222 IPR038407 -
Cca03g00609 249 Pfam GDA1/CD39 (nucleoside phosphatase) family 2 97 IPR000407 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00609 Cca-Chr3 10564222 10573471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00609 1 96 Calmodulin-binding Proteins AT3G04080 69.792 4.73e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00609 K08493 - gmx:100801744 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00609 03 10564222 10573471 Cca03g00609 03 10564222 10573471 ECH