Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00608 ATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTATGACTTTGATCTGGTGGCATCAGACCCTAGTGATGCCAATACAAACAGTACCACCCTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAACACTAATCCAGAGGCAGGAATATCAGTACAGCAAGAGCAAGAGTCGACTATTGCAATTGCTGCTGCTGTTGAGGAACCTCCAAATGCTCATGCATTAGAACATCAGCCTGATGTGGATGGAGTTAATGATCACAGAACAGGTCATTTTTCATCTGGTCCAAAGAAGAGTGAACTAAGGATTGGGGAGTCATCAGCCTTTTTCACGTATGTCAAAGCATCAATACTGAAGAGCAATTTTGAAGGGGTTGTTAATGTTGACAATGGTGCTACACATGTGAGGATGGAAGTTACGCATCAAGCGCGTGCTCAACAAGGGGTTAGTGACCTTCAAGTGCATGAAAATGGAGAGACGTGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCAATAGTATGCCTGATTCTTTCTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACAACAAGGAAGAAAATTTACATCAGGGTGTGATGCATCCGAGAAATGGGACTCATTGTTCTGAGCTTGAAGTATCTGGCATGACCTCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCAAAAGAATATCCAGGACCTACAGAATCATCCTAATACAGCAATGCTTGCACAGTACAATCATCTTCCCCAAGGTGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTGCAACCTGGTCAGATTCCTACACCTCATTCATGGCCTTCATATGGAAGCCCAAGTTCATCAGATGCAAAATTGAGTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGGGTAAGGGGACAGTTTGTTAGAAAGATGAACGGTGCTAATGTGGATCTTAATGGGCAGCCTGCATCAACTGAATatgatgatgatgacgaagaggacgaggatgatCAGGGAGCAAGAGATTCATCTCCTGAGGATGTTTGA 1347 0.4224 MSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRNTNPEAGISVQQEQESTIAIAAAVEEPPNAHALEHQPDVDGVNDHRTGHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNGATHVRMEVTHQARAQQGVSDLQVHENGETCESQSQDDLPSSNSMPDSFSIERSCTPPASMEVSQQKHNKEENLHQGVMHPRNGTHCSELEVSGMTSQHAYPYYISGVVNHVMMPSSAQMYQKNIQDLQNHPNTAMLAQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPTPHSWPSYGSPSSSDAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKMNGANVDLNGQPASTEYDDDDEEDEDDQGARDSSPEDV 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00608 448 SUPERFAMILY CheY-like 1 45 IPR011006 -
Cca03g00608 448 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Cca03g00608 448 MobiDBLite consensus disorder prediction 199 243 - -
Cca03g00608 448 Pfam CCT motif 368 410 IPR010402 GO:0005515
Cca03g00608 448 MobiDBLite consensus disorder prediction 68 97 - -
Cca03g00608 448 MobiDBLite consensus disorder prediction 121 138 - -
Cca03g00608 448 MobiDBLite consensus disorder prediction 402 448 - -
Cca03g00608 448 Gene3D - 1 128 - -
Cca03g00608 448 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 1 433 - -
Cca03g00608 448 ProSiteProfiles CCT domain profile. 368 410 IPR010402 GO:0005515
Cca03g00608 448 MobiDBLite consensus disorder prediction 199 237 - -
Cca03g00608 448 MobiDBLite consensus disorder prediction 424 448 - -
Cca03g00608 448 MobiDBLite consensus disorder prediction 121 142 - -
Cca03g00608 448 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 433 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00608 Cca-Chr3 10556356 10562593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00608 1 447 Response Regulator Gene Family AT5G61380 45.810 2.00e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g00608 CCT 1.1e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00608 K12127 - gmx:100799728 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00608 03 10556356 10562593 Cca03g00608 03 10556356 10562593 ECH