Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00599 ATGGAAAACGTTTCAGTTCTGTGTAAGGAAGAGGATAAGATGAATTTGCCTCCTGGGTTTAGGTTTCACCCAACTGATGAAGAGCTTATTAGTCATTACCTTTACAGAAAGGTAACTGACACTAAATTCTCAGCTAGGGCCATTGGAGAGGTGGACTTAAACAGGTCTGAGCCTTGGGATTTGCCATATAAGGCCAAAATGGGGGAGAAAGAGTGGTACTTTTTCTGTGTGAGGGACAGGAAATATCCAACTGGTTTGAGGACCAATAGAGCCACTGAGGCAGGATACTGGAAGGCCACAGGGAAGGACAAAGAGATATTCAGAGGGAAATCTCTTGTGGGAATGAAGAAAACTTTGGTTTTCTACAGAGGAAGAGCACCCAAGGGAGAGAAAACCGATTGGGTCATGCATGAATATAGGCTCGAGGGTAAATTCTCTGTTCACAACCTCCCCAAAACTGCAAAGAACGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGTTTAGGTGTGAAGAAGAGTCATATTTCTGGGATGATGATGTTGGACTCTTTTGGAAACGAATTGGGTTCTTCTGCTTTGCCACCTCTTACTGATTCCTCACCTTCCATTGGCAACACCAAAGCACTGAGTGTGACTGAATCGCCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCCAAGAGGGATCTTTGATTCCTTcagcaacatcaacatcaccaacaccaacaccCTTTATGGTGTTTCTTCAAACCATTCATTCTACTCCACTCAAGGGGTTCAACTTCAGGCTCCACCAACTTTGCCATTACCCGGTTCTTCAAACCATTACCTTAGACCCATCATTGGTAATCAAGGATCAAACTTGAGGAATGGTTTTGAAGTAGCAGAGAGGGAAATGGTTAGTGTCTCCCATGAAACAGATGTTTCTACTAATGTAAACGCTGAAATCTCTTCTGTTCTGTCAAATCTTGATATGGGAAAAAGGCACTTTGAGAATCAGAACAATCCAATTGCTTCAGCTGCACCAGTGGACCTTGCTACCTTGTGGAACTACTGA 1059 0.423 MENVSVLCKEEDKMNLPPGFRFHPTDEELISHYLYRKVTDTKFSARAIGEVDLNRSEPWDLPYKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGEKTDWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSLGVKKSHISGMMMLDSFGNELGSSALPPLTDSSPSIGNTKALSVTESPYVPCFSNPIDVPRGIFDSFSNINITNTNTLYGVSSNHSFYSTQGVQLQAPPTLPLPGSSNHYLRPIIGNQGSNLRNGFEVAEREMVSVSHETDVSTNVNAEISSVLSNLDMGKRHFENQNNPIASAAPVDLATLWNY 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00599 352 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 7 348 - -
Cca03g00599 352 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Cca03g00599 352 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Cca03g00599 352 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Cca03g00599 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 348 - -
Cca03g00599 352 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00599 Cca-Chr3 10430559 10432770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00599 14 352 NAC Transcription Factor Family AT5G07680 57.602 1.69e-133 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g00599 NAM 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00599 - - gmx:547650 598.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00599 03 10430559 10432770 Cca11g01971 11 45132192 45133850 ECH
Cca03g00599 03 10430559 10432770 Cca03g00599 03 10430559 10432770 ECH