Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00593 ATGGCGCTTTTGGGGCTTCTCAGCTTGGTGGGGTTTCTTTCTCTGGCTTCACCTGTTTCTGCTTCTGGTTATGGTTGGATGAATGCTCATGCAACCTTCTATGGTGGGGGTGATGCCTCTGGCACTATGGGTGGAGCATGTGGATATGGGAACTTGTACAGCGAGGGCTATGGAACAAACAGTGCTGCATTGAGCACAGCTTTGTTCAACAATGGTTTAAGCTGTGGGGCATGTTTCGAGATTAGGTGTGTTAATGACAGAAAGTGGTGCCTTCCACACTCAGTTGTGGTAACTGCAACCAACTTCTGTCCCCCAAACAATGCCCTTCCGAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCATTTCGACCTTTCTCAACGTGTCTTCCAACAAATTGCTCAATACAAAGCTGGAATAGTGCCTGTGGCTTACCGAAGGGTCCCTTGCCGAAAGAGGGGGGGCATCAGATTCACCATCAACGGCCACTCGTACTTCAACCTAGTCCTAGTTACCAACGTTGGAGGTGCTGGTGATGTTCATGCTGTTTCCATCAAAGGGTCAAGAACAAATTGGCAACCAATGACTAGAAACTGGGGTCAGAATTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTTACCACTAGCGATGGACGCACCGTGGTCTCTTTCAATGTTGCACCCTCAACTTGGTCCTTTGGCCAAACCTTCTCTGGCCATCAATTCATCTAA 750 0.4867 MALLGLLSLVGFLSLASPVSASGYGWMNAHATFYGGGDASGTMGGACGYGNLYSEGYGTNSAALSTALFNNGLSCGACFEIRCVNDRKWCLPHSVVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQRVFQQIAQYKAGIVPVAYRRVPCRKRGGIRFTINGHSYFNLVLVTNVGGAGDVHAVSIKGSRTNWQPMTRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVVSFNVAPSTWSFGQTFSGHQFI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00593 249 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Cca03g00593 249 Gene3D - 156 248 IPR036749 -
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Cca03g00593 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Cca03g00593 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Cca03g00593 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Cca03g00593 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
Cca03g00593 249 PANTHER EXPANSIN 7 248 - -
Cca03g00593 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Cca03g00593 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Cca03g00593 249 SUPERFAMILY PHL pollen allergen 153 244 IPR036749 -
Cca03g00593 249 Gene3D - 13 152 IPR036908 -
Cca03g00593 249 SUPERFAMILY Barwin-like endoglucanases 25 174 IPR036908 -
Cca03g00593 249 SMART dpbb_1 61 146 IPR007112 -
Cca03g00593 249 Pfam Lytic transglycolase 62 146 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00593 Cca-Chr3 10292948 10295443 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00593 1 248 Expansin Gene Family AT2G03090 79.200 3.65e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00593 - K20628 gmx:100802401 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00593 03 10292948 10295443 Cca11g01970 11 45092336 45096033 ECH
Cca07g02175 07 49913654 49915078 Cca03g00593 03 10292948 10295443 ECH
Cca09g00234 09 5605522 5607699 Cca03g00593 03 10292948 10295443 ECH
Cca06g00635 06 18003590 18005898 Cca03g00593 03 10292948 10295443 ECH
Cca03g00593 03 10292948 10295443 Cca03g00593 03 10292948 10295443 ECH