Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00592 ATGGATCCATTCATTAACATATATACATGTGTTTGTGGAACTATTAGTCTTCCTGGTGACAATGGATTTGACCCTCTGGGGCTTGCTGAGGACCCAGAGAACTTGAGGTGGTATGTTCAAGCTGAGCTTGTGAATGGACGTTGGGCTATGTTGGGTGTTGCAGGAATGTTGCTTCCAGAGGTTTTCACCAAAATTGGAATCATCAATGCCCCTCAATGGTATGATGCAGGAAAATCAGAGTACTTTGCCTCATCCTCAACCCTCTTTGTCGTTGAGTTCATTTTGTTCCACTATGTGGAGATCAGAAGATGGCAGGACATTAAGAACCCTGGTTCTGTCAACCAAGACCCTATTTTCAAGCAATATAGCTTGCCCCCACATGAGTGTGGATACCCTGGTAGTGTATTCAACCCCTTGAACTTTGCACCAACTTTGGAGGCCAAGGAGAAGGAACTTGCCAATGGGAGATTGGCCATGTTGGCATTCTTGGGATTCGTTGTTCAACACAATGTGACAGGCAAAGGACCATTTGATAACCTCTTGCAGCACATCTCAGACCCATGGCACAACACCATCATCAATACAATTCGTGGCTATTAA 600 0.4483 MDPFINIYTCVCGTISLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFASSSTLFVVEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPHECGYPGSVFNPLNFAPTLEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHISDPWHNTIINTIRGY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00592 199 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 16 199 IPR001344 GO:0009765|GO:0016020
Cca03g00592 199 SUPERFAMILY Chlorophyll a-b binding protein 16 196 - -
Cca03g00592 199 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 16 199 - -
Cca03g00592 199 Gene3D Chlorophyll a/b binding protein domain 12 189 - -
Cca03g00592 199 Pfam Chlorophyll A-B binding protein 16 169 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00592 Cca-Chr3 10289135 10291478 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00592 16 192 Chloroplast and Mitochondria Gene Families AT3G61470 56.284 1.05e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00592 K08910 - gmx:100798548 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00592 03 10289135 10291478 Cca03g00592 03 10289135 10291478 ECH