Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00587 ATGGAGAATCAACACACGTTCTGGAAGTCCAATTATGAAATTGACGAGTTTCCAGTTGCACCTACGTGCCAATTTTCTTCATATGATTATAGCTGGGATAATGCTAATGATGATGGTTATCATTGGTCATATCAATATGATGATCAATTTCCTTGGCAAGATAGCTATCTTGATGCTATCCCTTTTTCGAAGTGTTATTATCCTCATGACATTTTCTATGAAACTCTTCCAATTGAACCAAGCCCGTTAAGCGCACAAGATTATGACTTTTGTGACGTTAATAATGTGCTTTCTGCGTGGAATGAAGTTGATGGTTCTGACAAAGCTGTGTTCTCATCATGTAATGATGGAGAAAGTGTGCATGAAGTGAGGGAAGATTTTAAGGGTAAGCAGTGCAGGGAAGAGACAAGTGGAAGTGCGAGAATGTTGTCAAGGAAAACGGTTTCTGAGTACTTTTACATGCCAATATCACAAGCTGCAAGAGAGCTTAATGTGGGTCTCACACACTTGAAGAAAAGGTGTAGGGAGTTAGGGATTCAGAGGTGGCCACAGAGGAAGCTCATGAGTTTGCAAACCCTTATAAAGAAAATACAGGATCAAATAGAGGGGTATGAAAATGATGAAAAAATAAGGGCTGCCATTGAGGTGTTGGAGAGAGAAAAGAGGATGGTAGAGGAAATGCCGGATTTACAACTTGATGATAATACGAGAAGGCTTAGACAAGCTTGTTTGAAGGCTAACTACAAGAAGAGGAGACTCATGGGCATGCATGAGGTTCATGAAACCACAATCTCCCCTTAG 801 0.4045 MENQHTFWKSNYEIDEFPVAPTCQFSSYDYSWDNANDDGYHWSYQYDDQFPWQDSYLDAIPFSKCYYPHDIFYETLPIEPSPLSAQDYDFCDVNNVLSAWNEVDGSDKAVFSSCNDGESVHEVREDFKGKQCREETSGSARMLSRKTVSEYFYMPISQAARELNVGLTHLKKRCRELGIQRWPQRKLMSLQTLIKKIQDQIEGYENDEKIRAAIEVLEREKRMVEEMPDLQLDDNTRRLRQACLKANYKKRRLMGMHEVHETTISP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00587 266 PANTHER PROTEIN RKD4 44 260 IPR044607 GO:0003700
Cca03g00587 266 Pfam RWP-RK domain 143 190 IPR003035 -
Cca03g00587 266 Coils Coil 187 207 - -
Cca03g00587 266 ProSiteProfiles RWP-RK domain profile. 124 210 IPR003035 -
Cca03g00587 266 PANTHER PROTEIN RKD1-RELATED 44 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00587 Cca-Chr3 10171847 10175872 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00587 29 256 AtRKD Transcription Factor Family AT1G18790 41.202 2.03e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Cca03g00587 RWP-RK 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00587 - - gmx:100782238 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00587 03 10171847 10175872 Cca03g00587 03 10171847 10175872 ECH